Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27830 251 / 4e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029881 [exp] 538 / 0 AT5G27830 245 / 9e-80 unknown protein Lus10029882 [exp] 42 / 0.0003 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024200 [exp] 390 / 3e-137 AT5G27830 277 / 6e-93 unknown protein Potri.013G014800 [exp] 352 / 2e-122 AT5G27830 235 / 1e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0644 [flax] [poplar] Fz PF03024 [flax] [poplar] Folate_rec Folate receptor family
Representative CDS sequence Show only first row Show all	>Lus10020660 pacid=23140934 polypeptide=Lus10020660 locus=Lus10020660.g ID=Lus10020660.BGIv1.0 annot-version=v1.0 ATGAAGAGGAAAAGAGATTACACAACTCTCTCGCTGTTGCTGCTGCTCTCGCTTTACTCGCAGATCAGTTTCTCTTCTGGAAAATCTGAGGGAGTCTGTG TGTCGAAAGGTGGCCGATTTCCACCATACCAAGCTGAAGGCCAGCCGCCTAAAAAGGTAGGCAAGGGTTCAAAAGATTTGACCCTCTGCAGGATCTTTCG CAAAAGGACTTGCTGTGATGTAGCTCAGACGCATCCTGCTTTGTTGTCCCTTAGGCGGCTGGCCTCTATCGGGGAAGCCAAAGAGTCATGCTTACAGTTC TGGGAGGCATTGGAATGTTCGATTTGCGATCCAAAAGTCGGCGTCCATCCTGGACCTCCTGTTATATGCGCCTCTCTTTGTGACAGAGCCTATCAAGCTT GTGGCGATGCCTACTTCTCCATGGATTCGAAAACTCGATATCTAGCACCATGTGGAGTGAACGACTTCCTATGTGGTAGAGCAGCAGAATGGGTATCCAA TGGAACAGATTTCTGCACTGCTTTGGGATTCAGTGTTGGAGTTTCCGAGCACTCATTCCATGGCGCCAATCAAGCTGCATGCTATGGTGGCAAGAGCAGT GTTGATTACATCTCTGATTCGTGGACGAAACCACAGAGAAACCAAAATTCCGTCAGTTTGGGCTGGTTAGAAGGCTTCCAGCAATGGGCATTGGAGATGT CGTTTAGTGAAATGGTATCGTGGGCAGTTGGAGGGATGGTTCTTACTGCAGGACTCTTATTTGTAAGCAAAAGGAAGAGTTATAACCGACGCCAGAAGCT AGCAGCTATCCAGAGAGCAGCGAGGAGACTGGATGGCAAGATGGTCCAGTTCGATGCGCAAGGAAAAAGAAAAGTCAATCAAAGATGA
AA sequence Show only first row Show all	>Lus10020660 pacid=23140934 polypeptide=Lus10020660 locus=Lus10020660.g ID=Lus10020660.BGIv1.0 annot-version=v1.0 MKRKRDYTTLSLLLLLSLYSQISFSSGKSEGVCVSKGGRFPPYQAEGQPPKKVGKGSKDLTLCRIFRKRTCCDVAQTHPALLSLRRLASIGEAKESCLQF WEALECSICDPKVGVHPGPPVICASLCDRAYQACGDAYFSMDSKTRYLAPCGVNDFLCGRAAEWVSNGTDFCTALGFSVGVSEHSFHGANQAACYGGKSS VDYISDSWTKPQRNQNSVSLGWLEGFQQWALEMSFSEMVSWAVGGMVLTAGLLFVSKRKSYNRRQKLAAIQRAARRLDGKMVQFDAQGKRKVNQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27830			unknown protein		Lus10020660 [exp]	0	1
AT1G12390			Cornichon family protein (.1)		Lus10015866 [exp]	3.6	0.8780
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	3.7	0.8759
AT5G12240			unknown protein		Lus10026824 [exp]	3.9	0.8961
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	4.9	0.9023
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	6.2	0.9015
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	8.5	0.8993
AT5G51510			unknown protein		Lus10027200 [exp]	9.5	0.8759
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	10.0	0.8834
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	10.0	0.8972
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	11.0	0.8830

Compare expression of checked genes

Lus10020660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.