Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56220 126 / 2e-38 Dormancy/auxin associated family protein (.1.2.3.4) AT1G54070 58 / 9e-12 Dormancy/auxin associated family protein (.1) AT1G28330 48 / 1e-07 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) AT5G44300 39 / 0.0002 Dormancy/auxin associated family protein (.1) AT2G33830 37 / 0.0008 Dormancy/auxin associated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029881 [exp] 174 / 3e-54 AT5G27830 245 / 9e-80 unknown protein Lus10015193 [exp] 147 / 2e-46 AT1G56220 134 / 3e-41 Dormancy/auxin associated family protein (.1.2.3.4) Lus10031488 [exp] 143 / 6e-45 AT1G56220 136 / 3e-42 Dormancy/auxin associated family protein (.1.2.3.4) Lus10013180 [exp] 59 / 2e-11 AT1G54070 78 / 5e-19 Dormancy/auxin associated family protein (.1) Lus10008142 [exp] 56 / 1e-10 AT1G54070 65 / 1e-14 Dormancy/auxin associated family protein (.1) Lus10025446 [exp] 48 / 5e-08 AT2G33830 82 / 4e-22 Dormancy/auxin associated family protein (.1.2) Lus10013997 [exp] 43 / 6e-06 AT1G28330 119 / 4e-36 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) Lus10015418 [exp] 43 / 6e-06 AT1G28330 120 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5) Lus10013996 [exp] 42 / 7e-06 AT1G28330 74 / 2e-18 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014900 [exp] 124 / 3e-37 AT1G56220 97 / 7e-27 Dormancy/auxin associated family protein (.1.2.3.4) Potri.005G024250 [exp] 116 / 6e-35 AT1G56220 86 / 2e-23 Dormancy/auxin associated family protein (.1.2.3.4) Potri.003G070500 [exp] 63 / 1e-13 AT1G54070 90 / 6e-24 Dormancy/auxin associated family protein (.1) Potri.001G164800 [exp] 59 / 5e-12 AT1G54070 67 / 3e-15 Dormancy/auxin associated family protein (.1) Potri.004G047100 [exp] 49 / 7e-08 AT1G28330 122 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05564 [flax] [poplar] Auxin_repressed Dormancy/auxin associated protein
Representative CDS sequence Show only first row Show all	>Lus10020661 pacid=23140869 polypeptide=Lus10020661 locus=Lus10020661.g ID=Lus10020661.BGIv1.0 annot-version=v1.0 ATGGGACTGCTCGACCAGCTCTGGGACGACACAGTCGCCGGTCCGACCCCGGACAACGGCCTCGGCAAGCTACGGAAGTACAAAACTTTCAGCTTCCGAT CAAACTCCGGCAAGGATTCCGATGGCGGGAATGTGAAATCGTACGGTAACGCGTCGGAGGAAGCAGCGACGAGAGTGACGCGAAGTATAATGATCGTTAA GCCGCCGGGGTACCAGAGCGGATCTACCCCTCCTGTTTCCCCCGCCGGATCTACTCCTCCGGTGTCCCCATTTTCCGGAAACAGAGGACCGCCATCCCGG TTCAGAAGGTGGTCAGCATCGGATGCATACGAGAAGGAGACCGTGGTGGCAGTCGTCGGAAGCCCGGTTGGATCAAGGAGCCCTGCTTCTCCTTACGACG TCTGA
AA sequence Show only first row Show all	>Lus10020661 pacid=23140869 polypeptide=Lus10020661 locus=Lus10020661.g ID=Lus10020661.BGIv1.0 annot-version=v1.0 MGLLDQLWDDTVAGPTPDNGLGKLRKYKTFSFRSNSGKDSDGGNVKSYGNASEEAATRVTRSIMIVKPPGYQSGSTPPVSPAGSTPPVSPFSGNRGPPSR FRRWSASDAYEKETVVAVVGSPVGSRSPASPYDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	0	1
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001876 [exp]	2.8	0.9193
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	4.2	0.9273
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	4.9	0.9355
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	5.1	0.9275
					Lus10036703 [exp]	6.3	0.9221
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	6.3	0.9243
					Lus10027664 [exp]	7.3	0.9218
AT3G50940			P-loop containing nucleoside t...		Lus10015802 [exp]	7.7	0.9065
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	9.0	0.9166
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	9.2	0.8554

Compare expression of checked genes

Lus10020661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.