Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71160 451 / 2e-156 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT1G25450 448 / 6e-155 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G68530 447 / 1e-154 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G19440 426 / 6e-146 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 419 / 5e-143 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 412 / 1e-140 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT5G49070 400 / 3e-136 KCS21 3-ketoacyl-CoA synthase 21 (.1.2) AT1G01120 399 / 3e-135 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G26640 388 / 5e-131 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 387 / 2e-130 KCS2 3-ketoacyl-CoA synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029880 [exp] 594 / 0 AT1G71160 337 / 9e-112 3-ketoacyl-CoA synthase 7 (.1) Lus10031486 [exp] 575 / 0 AT1G71160 450 / 1e-156 3-ketoacyl-CoA synthase 7 (.1) Lus10034319 [exp] 462 / 2e-160 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 459 / 4e-159 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10002533 [exp] 434 / 3e-149 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 431 / 8e-148 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 427 / 2e-146 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 427 / 2e-146 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 403 / 1e-136 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015100 [exp] 534 / 0 AT1G71160 486 / 6e-170 3-ketoacyl-CoA synthase 7 (.1) Potri.010G125300 [exp] 460 / 2e-159 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G120300 [exp] 454 / 4e-157 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.001G211400 [exp] 451 / 1e-156 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1) Potri.004G155600 [exp] 429 / 3e-147 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 426 / 3e-146 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 426 / 5e-146 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 388 / 4e-131 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 387 / 6e-131 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.002G178000 [exp] 387 / 2e-130 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10020662 pacid=23140943 polypeptide=Lus10020662 locus=Lus10020662.g ID=Lus10020662.BGIv1.0 annot-version=v1.0 ATGATGATAGCAACAGAGGTATCAGTTCCAATGTTCGAGCGACTCGCTGCCGTTGTCGACGAATTTTCGTCCCTGCTCAACCCGAAAGCCATAGCATTGG TAGCTGTATTTGCCGTTGCGTTATACTACACTTCCTCCACTTCGAAGCGAGTCTACCTCGTGGATTCTGTGTGCTTCAAGGGTCCGAAAACCCACCGAGT CCCTATCTCGACGTTCGTGGAACACGCCGAGATAGGCAAGACTACGAGGGACACGATAGAGTTCCAGACCAAAGTCATCGAGCGGTCAGGGATTGGCGAG CGGAGCTACCTTCCCACGGGGATGCACTTCCTCCCGCCTAGTTCTTCGTTAAAGTACGGGGTCGAGGAACTCGAGATGGTGCTCTTCTCCACGGTTCAGA ATCTTTTGACCAAGCTCGATACTGATCCGAAAGCTATAGACGCTGTGATCACGAATTGTAGCCTAGTCTCGTTGACACCTTCTTTAGCTGCGATGGTGAT CAACAAGTTCGGGTTCAGGAGCGACGTGAAGAGCTACAACATCTCCGGGATGGGGTGCAGTGCCGGAATTCTATCGTTGTCTTTGGCTCGAGATATGCTC CAAGTTCACGAGAGCTCATTGGTTCTCGTTGTCAGCGTGGAGGCCATGTGTCCAAGCATCTACGAAGGCAAAGTCAAGTCGATGCTGCTGGCGAACTGTC TCTTCCGGATGGGAGGTTCCGCGGTCCTTCTGTCGAATCGTGACATCGACAGGAAGACAGCGAAATACGAGCTCCAAGACATAGTGAAGACGAATCTCGG GTCGAAAGACGTGTCGTATAAGTGTGTGTTTCAAGAGACCGACAGTGAAGGCTATACCGGTGTAGCCTTATCGAAGTCGATCCTACAGGTAGCGAGCGAG GGTCTGAAGACTAACCTCGTCACGCTAGCTGCGAGGGCTTTACCGTATTCCGAGATAATCAAGTATGGATTCTCGTCTGGTCGGTATATGCCGGATTTCA AGAAGGCGTTTGATCATTTCTGCATTCATGCGGGAGGGAAAGCTGTGATTGATGCTATCAAAAGGAGCCTGAAGTTGAGAGACGAGGATGTCGAAGCGTC GAAGATGACGCTTCATAGATTTGGCAACACTTCCTCGTCGTCGATTTGGTACTCGCTAGGGTATCTAGAGGCGAAAGGGAGGATCAAGGAAGGTGACAGA GTTTGGCAAATAGGGTTTGGGAGTGGATTTAAATGTAACAGTGCTGTCTGGAAGTGTATTTCCAGGATGAAATCAGACCGTTGGAATGTTTGGTCAGATT GCATCCACCAATATCCATTGGAGGTTACTGAATCTTCAAGTGATCACTAG
AA sequence Show only first row Show all	>Lus10020662 pacid=23140943 polypeptide=Lus10020662 locus=Lus10020662.g ID=Lus10020662.BGIv1.0 annot-version=v1.0 MMIATEVSVPMFERLAAVVDEFSSLLNPKAIALVAVFAVALYYTSSTSKRVYLVDSVCFKGPKTHRVPISTFVEHAEIGKTTRDTIEFQTKVIERSGIGE RSYLPTGMHFLPPSSSLKYGVEELEMVLFSTVQNLLTKLDTDPKAIDAVITNCSLVSLTPSLAAMVINKFGFRSDVKSYNISGMGCSAGILSLSLARDML QVHESSLVLVVSVEAMCPSIYEGKVKSMLLANCLFRMGGSAVLLSNRDIDRKTAKYELQDIVKTNLGSKDVSYKCVFQETDSEGYTGVALSKSILQVASE GLKTNLVTLAARALPYSEIIKYGFSSGRYMPDFKKAFDHFCIHAGGKAVIDAIKRSLKLRDEDVEASKMTLHRFGNTSSSSIWYSLGYLEAKGRIKEGDR VWQIGFGSGFKCNSAVWKCISRMKSDRWNVWSDCIHQYPLEVTESSSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10020662 [exp]	0	1
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	6.9	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	7.6	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	9.6	1.0000
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021019 [exp]	11.5	0.9661
AT1G08790			Protein of unknown function (D...		Lus10021997 [exp]	12.5	1.0000
					Lus10033089 [exp]	13.2	1.0000
					Lus10024550 [exp]	13.7	1.0000
					Lus10020110 [exp]	14.1	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10018417 [exp]	14.2	1.0000
					Lus10035617 [exp]	15.2	1.0000

Compare expression of checked genes

Lus10020662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.