Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05600 394 / 5e-138 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 370 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 361 / 2e-124 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 325 / 5e-111 ATSEH soluble epoxide hydrolase (.1) AT2G26750 320 / 3e-109 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 286 / 1e-95 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 274 / 7e-91 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 59 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 54 / 6e-08 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G33180 52 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029878 [exp] 617 / 0 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 355 / 6e-123 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 351 / 7e-121 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 347 / 1e-119 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 338 / 5e-116 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 323 / 3e-110 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 303 / 2e-102 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 291 / 5e-98 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 286 / 3e-95 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013500 [exp] 452 / 4e-161 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 381 / 4e-133 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 370 / 2e-128 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 367 / 3e-127 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 356 / 5e-123 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 351 / 3e-121 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 338 / 7e-116 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 288 / 3e-96 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 262 / 5e-88 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 162 / 1e-47 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10020663 pacid=23140893 polypeptide=Lus10020663 locus=Lus10020663.g ID=Lus10020663.BGIv1.0 annot-version=v1.0 ATGGAAGAAATCAGCCACAGAACAGTGAATGTTAATGGCATCAACATGCACATTGCTGAAAAGGGTCGAGAACAAGGAGAGGAAAAACCAGTAGTCCTAT TCCTCCACGGATTCCCTGAGCTCTGGTACACATGGCGCCACCAAATCCTCCACCTAAGCTCCCTCGGCTTCCACGCCGTGGCTCCCGACCTGCGAGGCTT CGGAGACACTGATGCCCCCGAATTCAGCCACCAATACACCTGCCACCATGTTGTAGGCGATCTCATAGCCCTCATCGACCACCACATTGGCGTGGACCAG GTGTTCCTAGTGGCTCATGACTGGGGAGCCATCATTGGATGGTACTTGTGCCAGTTCAGGCCTGATAAAGTCAAGGCATTTGCTTGCCTTAGCGTACCCT TCAGGCCTAGGAACCCCAAGATCAAGCCTGTGGCTGGGATGAGGCTTGTGTTTGGTGAGGATTACTATATGTGCAGGTTTCAGGAGGTTGGAGTTGTGGA AGGTGAGATGAAGAGGGCTGGGACGGATCAGGTGCTGAAGAAGATTTTGAGTAACAGGAATCCTGGCCCTCCGTGTATTCCTAAGAAGGATGCGGCTGTG AAGCCGTTTGGGATTTGTGCTAAGAATCCTCCAAAGTTGCCATCTTGGATTAGCCAGGAGGATTTGAACTACAGTGTTGAGAAGTTTGATGAGAAGGGGT TCACTGGAGGGCTCAACTACTACAGAGCATTGGATCTGAGTTGGGAGCTGACTGCGGCCTGGACAGGGACCGCGGTGGTGGTGCCGACGAAGTACGTGGT GGGAGATGAGGACATGGTGTATACAACACCAGGGATAAAAGAGTATGTCCATGGAGGTGGGTTCAAGAGGGATGTGCCATTGTTGGAGGAGGTTGTGGTG ATGGAAGGAGTTGGTCACTTTCTTAACCAGGAAAAGGCAGATGAAGTCAATGCTCATATCTACCACTTCATCAAAAAGTTCATCTAA
AA sequence Show only first row Show all	>Lus10020663 pacid=23140893 polypeptide=Lus10020663 locus=Lus10020663.g ID=Lus10020663.BGIv1.0 annot-version=v1.0 MEEISHRTVNVNGINMHIAEKGREQGEEKPVVLFLHGFPELWYTWRHQILHLSSLGFHAVAPDLRGFGDTDAPEFSHQYTCHHVVGDLIALIDHHIGVDQ VFLVAHDWGAIIGWYLCQFRPDKVKAFACLSVPFRPRNPKIKPVAGMRLVFGEDYYMCRFQEVGVVEGEMKRAGTDQVLKKILSNRNPGPPCIPKKDAAV KPFGICAKNPPKLPSWISQEDLNYSVEKFDEKGFTGGLNYYRALDLSWELTAAWTGTAVVVPTKYVVGDEDMVYTTPGIKEYVHGGGFKRDVPLLEEVVV MEGVGHFLNQEKADEVNAHIYHFIKKFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10020663 [exp]	0	1
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	1.4	0.9660
					Lus10018463 [exp]	2.4	0.9444
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	6.3	0.9392
					Lus10011220 [exp]	7.7	0.9386
AT1G23000			Heavy metal transport/detoxifi...		Lus10032445 [exp]	7.9	0.9358
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	8.8	0.9271
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	11.5	0.9471
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	13.7	0.9240
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	16.6	0.9286
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	18.0	0.9394

Compare expression of checked genes

Lus10020663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.