Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27860 79 / 5e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G023000 [exp] 81 / 7e-20 AT5G27860 62 / 4e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020665 pacid=23140863 polypeptide=Lus10020665 locus=Lus10020665.g ID=Lus10020665.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCTTCGTCGGAATCCTCAGACTCATCCCACTCATCTGATTCCTCTACCTCTCGCCGCCGTCTCCGGCGACACAACCACCACCACCGTAGTC AACGCGACAAGGACAGGGACTCTCTCAAGGTTCGTAGTAGGAAGGGCAAGGAAAAATCCCATTCCAAGCGTCGCCGCCAGCGCCGCCGTTCTTCCTCTGA TTCTGAGGATACCGATTCCGATTCGTACTCATCCAGTGAAAGCTCATCCGAAAGTGACCGTGAAACATCTAGTCACTCGAAGAGGCGCAGGAAAAGCGAT CGGTCAAAGAAGTTTCTAGGACGCGACAAGGACAAGGACAAGTATGATGGTGTGCGCCGAAGTGCTGTTTCCGGGAAAAAGATACTGCTGAAGGTGGACA AATCAAGAGAGGACAAAGAGGCAGAGAACAAGAGGAACGAATTGCTCAAGTTCTTGAATGCTAATTTCGATTGA
AA sequence Show only first row Show all	>Lus10020665 pacid=23140863 polypeptide=Lus10020665 locus=Lus10020665.g ID=Lus10020665.BGIv1.0 annot-version=v1.0 MAASSSESSDSSHSSDSSTSRRRLRRHNHHHRSQRDKDRDSLKVRSRKGKEKSHSKRRRQRRRSSSDSEDTDSDSYSSSESSSESDRETSSHSKRRRKSD RSKKFLGRDKDKDKYDGVRRSAVSGKKILLKVDKSREDKEAENKRNELLKFLNANFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27860			unknown protein		Lus10020665 [exp]	0	1
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	13.6	0.8090
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	13.9	0.7678
AT3G28410			F-box/RNI-like superfamily pro...		Lus10029357 [exp]	15.1	0.7094
					Lus10013907 [exp]	18.2	0.7976
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	18.9	0.7628
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	20.2	0.8065
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	22.4	0.8000
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Lus10038568 [exp]	22.8	0.7909
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	24.0	0.7693
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	24.0	0.7942

Compare expression of checked genes

Lus10020665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.