Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09160 660 / 0 Protein phosphatase 2C family protein (.1.2) AT1G68410 591 / 0 Protein phosphatase 2C family protein (.1.2) AT1G47380 501 / 3e-177 Protein phosphatase 2C family protein (.1) AT2G34740 115 / 7e-29 Protein phosphatase 2C family protein (.1.2) AT5G10740 110 / 1e-26 Protein phosphatase 2C family protein (.1) AT1G78200 108 / 1e-26 Protein phosphatase 2C family protein (.1.2) AT5G24940 109 / 5e-26 Protein phosphatase 2C family protein (.1) AT1G67820 109 / 6e-26 Protein phosphatase 2C family protein (.1) AT1G07160 107 / 1e-25 Protein phosphatase 2C family protein (.1) AT1G34750 103 / 6e-25 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042659 [exp] 508 / 8e-180 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009763 [exp] 506 / 3e-179 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10006485 [exp] 505 / 1e-178 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 502 / 2e-176 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 115 / 8e-29 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 113 / 2e-28 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10042275 [exp] 113 / 1e-27 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 111 / 5e-27 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 105 / 2e-25 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021200 [exp] 706 / 0 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G011600 [exp] 693 / 0 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 618 / 0 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G121600 [exp] 612 / 0 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.014G031200 [exp] 497 / 2e-175 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G127300 [exp] 479 / 2e-168 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 112 / 5e-27 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 108 / 8e-26 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 105 / 3e-25 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 103 / 6e-25 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10020666 pacid=23140953 polypeptide=Lus10020666 locus=Lus10020666.g ID=Lus10020666.BGIv1.0 annot-version=v1.0 ATGAGCCAGGCCGAAGCAGCACCAAGGGCGAAGCCCCCTCTTGTTCCACTCGCGACATTGATCGGTCGCGAGGTGAGGAACGAGAAGGCTGAGAAGCCTT TCTTGAAGTATGGACAAGCTGCTCTGGCAAAGAAAGGGGAGGATTACTTTCTCATAAAAACTGATCACCAAAGGATTCCTGGAAACCCCTCCTCTTCGTT TTCTGTCTTTGCGATTTTCGATGGCCACAATGGCATTTCCGCGGCCATCTTTGCGAAGGAACACTTATTGGACAATGTCTTGAGTGCAATACCTCAAGGA GCTAGTAGAGAAGAATGGCTTCAGGCCCTCCCTCGAGCACTCGTTGCTGGTTTTGTGAAAACTGATATAGAATTTCAGCAGAGAGGGGAAACCTCTGGTA CGACCGTGACATTTGTTGTGATCGATGGCTGGACTATTACTGTTGCCTCCGTTGGGGATTCTCGATGCATATTGGACACTCAGCAGGGTGTCGTTTCCCT CTTAACTGTTGATCACAGGCTGGAGGATAATGTAGAAGAGAGGGAGCGTGTAACTGCAAGTGGCGGTGAAGTTGGTCGTCTCAATATTTACGGGGGCAAC CAGGTTGGTCCTTTGCGCTGCTGGCCGGGTGGATTATGCCTATCTAGGTCAATTGGTGATACAGACGTTGGAGAGTACATTGTTCCAATACCACATGTTA AACAAGTGAAACTCTCAAATGCTGGAGGAAGACTGATAATTGCTTCTGATGGTATCTGGGACGCACTCTCTTCCGAGATGGCTGCCAAATCTTGTCGCGG TTTACCTGCAGAGCTTGCTGTCAAGTTAGTTGTTAAGGAGGCTTTAAGGTCTAGGGGCTTGAAGGATGATACAACATGCCTTGTTGTTGATGTTATTCCA TCAGACCGTCCTATCTTACCTCCAACTCCTCGGAAGAAGAACAGTATGATGAGCTTGCTTTACTTCGGAAGGAAGCACTCGAGCAATACTAACAAATCTG CAAACAAGCTTTCAGCCGTTGGTGTGGTGGAGGAATTGTTTGAAGAAGGTTCTGCCATGCTTGCAGAGAGACTGGGAAAGGACCTTCCTTCAGATCGAAG CTCGGGGCTGTACAGATGTGCTGTGTGCCAGGTGGACCAAACACCGGGAGACGGGTTTTCAGTGAACTCGGGTCCATTCTTCACCCCTGGATCGAAGCCA TGGGAGGGTCCCTTCCTGTGCACAAACTGTCGGAAGAAGAAAGACGCAATGGAAGGGAAGCGGCCAGGGGGATAG
AA sequence Show only first row Show all	>Lus10020666 pacid=23140953 polypeptide=Lus10020666 locus=Lus10020666.g ID=Lus10020666.BGIv1.0 annot-version=v1.0 MSQAEAAPRAKPPLVPLATLIGREVRNEKAEKPFLKYGQAALAKKGEDYFLIKTDHQRIPGNPSSSFSVFAIFDGHNGISAAIFAKEHLLDNVLSAIPQG ASREEWLQALPRALVAGFVKTDIEFQQRGETSGTTVTFVVIDGWTITVASVGDSRCILDTQQGVVSLLTVDHRLEDNVEERERVTASGGEVGRLNIYGGN QVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAVKLVVKEALRSRGLKDDTTCLVVDVIP SDRPILPPTPRKKNSMMSLLYFGRKHSSNTNKSANKLSAVGVVEELFEEGSAMLAERLGKDLPSDRSSGLYRCAVCQVDQTPGDGFSVNSGPFFTPGSKP WEGPFLCTNCRKKKDAMEGKRPGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	0	1
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10021488 [exp]	1.4	0.7735
AT1G22790			unknown protein		Lus10028733 [exp]	2.2	0.7580
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018425 [exp]	2.2	0.7749
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	5.5	0.7721
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	10.6	0.7639
AT3G05520			Subunits of heterodimeric acti...		Lus10020651 [exp]	17.0	0.7417
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	18.4	0.7012
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	20.0	0.7478
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	21.7	0.7308
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	26.7	0.7196

Compare expression of checked genes

Lus10020666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.