Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 134 / 2e-36 Protein kinase family protein (.1) AT3G53840 121 / 1e-31 Protein kinase superfamily protein (.1) AT1G11915 52 / 5e-08 unknown protein AT1G10380 51 / 1e-07 Putative membrane lipoprotein (.1) AT5G50290 49 / 5e-07 unknown protein AT3G17350 44 / 2e-05 unknown protein AT4G03230 41 / 0.0004 S-locus lectin protein kinase family protein (.1) AT1G21210 41 / 0.0004 WAK4 wall associated kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029876 [exp] 339 / 1e-108 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10014387 [exp] 129 / 1e-34 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10036687 [exp] 57 / 1e-09 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 57 / 2e-09 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10037078 [exp] 52 / 1e-07 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036906 [exp] 49 / 6e-07 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037236 [exp] 46 / 2e-06 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10042105 [exp] 43 / 0.0001 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 42 / 0.0001 AT5G50290 368 / 2e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011700 [exp] 285 / 1e-98 AT5G02070 143 / 9e-40 Protein kinase family protein (.1) Potri.005G021300 [exp] 281 / 2e-97 AT5G02070 130 / 5e-35 Protein kinase family protein (.1) Potri.008G059900 [exp] 137 / 2e-37 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G118500 [exp] 125 / 2e-33 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.006G090200 [exp] 121 / 1e-31 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.010G158500 [exp] 71 / 1e-14 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 65 / 2e-12 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 60 / 1e-10 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.011G007900 [exp] 54 / 2e-08 AT1G11915 379 / 6e-132 unknown protein Potri.013G150800 [exp] 53 / 5e-08 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020667 pacid=23140820 polypeptide=Lus10020667 locus=Lus10020667.g ID=Lus10020667.BGIv1.0 annot-version=v1.0 ATGATCAGAATGTTTTTGACATTCCTTCTCCTCACTTCCATACTCCATGTGTCGATAAGGGCGACAACCCTCGAGGCATGTCCTCGATGCGGCAACATGA AAGTCCCATACCCGCTCAGCACGAGTAACAGTTGTGGTGACCCTAGGTACAGAGTCTACTGTAACAATCGCACCCTGGAGTTCATGTCGGCTCAGGGGCT TTACTATAAAATCCTAAGCATCAACCCGAGTAGTTCCAAGCTCGTCATAAGCCCTCCTTCGATCCAAACCAGCACATGCTACTCATCTGACCTTGGTTTA GGAGGGATTAAGCTTGATGACAAGCTGCCCTTTAACATCTCGACTCGTAACACTGTCATGCTGTTTAACTGCTCCGATAACATCCTTCTGTCGCCATTGA ACTGTTCCTCGGCCAGCTTTTGTCGCAAGTTCGAAGCTTTGGAAGTAGGGAGTGGATGCAAAGGTACCCTTTGCTGCCATTACTTGAAAGATTCAGCCAT GACCTCTCGCATGATCAGGGTTAGGACGGGAGGGTGCACTGCTTACACATCGGTGGTCAACATAAATCCCGACGATCCTGCAACTGTGTGGAACTATGGC ATCGAGCTCCAATGGGTGCCTCCTAGCTGA
AA sequence Show only first row Show all	>Lus10020667 pacid=23140820 polypeptide=Lus10020667 locus=Lus10020667.g ID=Lus10020667.BGIv1.0 annot-version=v1.0 MIRMFLTFLLLTSILHVSIRATTLEACPRCGNMKVPYPLSTSNSCGDPRYRVYCNNRTLEFMSAQGLYYKILSINPSSSKLVISPPSIQTSTCYSSDLGL GGIKLDDKLPFNISTRNTVMLFNCSDNILLSPLNCSSASFCRKFEALEVGSGCKGTLCCHYLKDSAMTSRMIRVRTGGCTAYTSVVNINPDDPATVWNYG IELQWVPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	1.0	0.9499
AT1G05270			TraB family protein (.1)		Lus10038419 [exp]	4.7	0.7885
					Lus10039674 [exp]	5.1	0.9370
					Lus10004437 [exp]	6.2	0.9370
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	7.2	0.9370
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	8.1	0.9370
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	8.8	0.9370
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	9.2	0.8024
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	9.5	0.9370
					Lus10021739 [exp]	10.2	0.9370

Compare expression of checked genes

Lus10020667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.