Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27030 1640 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G16830 1549 / 0 TPR2 TOPLESS-related 2 (.1) AT1G80490 1016 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1011 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 977 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT2G25420 240 / 1e-66 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 50 / 7e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 49 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 49 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 48 / 4e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029876 [exp] 2174 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10043258 [exp] 1381 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10023119 [exp] 1025 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011481 [exp] 1021 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 917 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10006650 [exp] 899 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 818 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 773 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 657 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012100 [exp] 1796 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.005G021700 [exp] 1792 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.003G030000 [exp] 1030 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1020 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.013G081300 [exp] 1019 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G066800 [exp] 1019 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1009 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G257900 [exp] 915 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 900 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 789 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10020668 pacid=23140964 polypeptide=Lus10020668 locus=Lus10020668.g ID=Lus10020668.BGIv1.0 annot-version=v1.0 ATGTCGTCGTTGAGCAGAGAATTGGTGTTTCTCATACTTCAGTTCCTTGAAGAGGAGAAATTCAAGGAGTCTGTTCACAAGCTTGAGAAAGAATCTGGGT TTTACTTCAACATGAAGTATTTCGATGAGAAAGTTCAGGCTGGAGAGTGGGACGAAGTTGAGAAGTACTTGGCAGGATTTACCAAAGTAGATGACAACAG ATACTCCATGAAGATTTTCTTTGAGATCAGGAAGCAGAAGTATCTTGAAGCACTTGATAAGCAGGATAAAGCGAAGGCTGTTGAAATTTTAGTCGGTGAC TTGAAAGTATTCTCCACTTTCAACGAAGAATTGTACAAAGAAATCACACAGCTTCTGACTCTTACCAATTTCAGGGAGAATGAGCAACTTTCTAAGTATG GAGATACTAAAACAGCTCGTAGTATAATGTTGATAGAGTTGAAGAAGCTTATTGAGGCAAATCCTCTTTTTCGGGATAAGCTCGCCTTTCCTACTTTGAA GGCATCAAGGTTAAGGACTCTTATCAATCAAAGTAGTATATTAGATCTGACGTCAGGTCCTTCCAGCTTAAATTGGCAGCACCAGTTGTGCAAGAACCCT AGGTCAAATCCAGACATCAAGACCTTGTTCATTGATCATACATGCACACCTTCAAATGGTCCCCTTGTTCCCGGACCTGTCAGTCTCCCGGTTGCTGCTG TTGCCAAACCTGTTGCTTATACATCTCTTGGGGCTCATGGTCCCTTTCCGCCTGCTGCAGCTGCTGCTAATCCTGGCGCTTTAGCTGGTTGGATGGCTAA TGCATCTGCTTCCTCATCTGTTCAAGCTGCTGTTGTTACAGCATCATCCATACCAGTTCCTCAAAATCAAGTTTCAGTTATGAAACGTCCTAGAACACCA CCAACAGCTTCTGGTATGGTCGAGTATCCAGGTCCAGATCATGAACTAATGAAACGTTTACGGCCACCTCAATCTGTCGAAGAAACTGAAAAAATCACTT TCCAGGTTACATATCCAACCTCTCAAAGATGGTCTCTGGATGACTTGCCAAGAACTGTAGCCTTGGTCATGCAACAGGGTTCAACTGTCATGAGCATGGA TTTTCACCCTTCGTACCACACATTACTTCTTGTTGGTTCTGCTAATGGAGAAATCACGCTATGGGAACTTGTATTACGTCAAAGGCTGATCTCAAAACCG TTTAAAGTTTGGGAAATGCAATCTTGTTCATTGCAATTTCAGGCTTCCATGGTCAAAGATACACCAATTGCTGTTACCCGTGTTGCATGGAGTCCTGATG GAAATTTCATTGGTGTTGCATTCAGCAAACATTTGGTTCACTTGTATTCTTATATTGGGTCAAATGATCTTCGCCAGCATCTAGAGATTGATGCCCATGG TGGTGGGGTTAACGACTTGGCTTTTGCTCATCCAAACAAACAACTATGTGTTGTAACATGTGGAGATGATAAGCTAATAAAGGTATGGGATTTGACTGGG AAGAAGGTGTTTCATTTTGAAGGCCATGAGGCACCGGTATATTCGATCTGCCCACACCACAAGGAAAGCATCCAGTTTATCTTCTCAACCGATGTCGATG GGAAGATAAAAGCCTGGCTATATGACAACATGGGATCCAGAGTTGACTATGACGCTCCTGGTCGCTGGTGCACTACTATGCTTTACAGTGCTGATGGGAG TAGGTTGTTTTCTTGCGGAACCAGCAAAGAAGGGGAATCTTATCTTGTAGAGTGGAATGAAAGTGAAGGAGCCATTAGGAGGAAGTATTCTGGGTTTGGG AAGAAATCTGCAGCAGGAGTTGCACAATTTGACACTACACAGAACCACTTCTTGGCTGTGGGCGAAGATGGTCGGATAAAGTTTTGGGATATGGATGATA CTAGCATGCTCACTAGCACTGAAGCTGACGGTGGACTTCCGGCCGTTCCACGGCTGAGATTCAGCAAGGATGGAAAGCTTCTTGCGGTGATGACTGCAGA CAATGGGTTTAAGATACTTGCTAATGGTGCTGGACTTAGGTCTTTGAGAGCAGTTGAAAACCCACCCTTTGAAGCATTGCGCTCCCCTGTCGAATCTATT TCTGTCAAGCCTTCTGTCGCATCTGGCGTTGGAAATGTTAGTCCACTCAATTTGAAAGTGGAAAGAAGCTCTCCTCCTCGTCCTTCTCCAGTCCAGAATG GGGTAGATCCCGTGAATAGAAATGCGGAAAAGCCAAGAGCTGTGGAAGAAGCTCTCGAGAAGTCCAAGCCCTGGCAGTTGACTGAAATAGTAGAACCTAG CGCGTGTCGAATGGTCACCTTGCCTGAAAACCCAGATACTTCAAGCAAGGTTGTCCGACTTCTTTATACAAACTCTGGTGTCGGCATTCTGGCATTGGGG TCAAATGGCATCCAGAAGCTTTGGAAATGGGCACGGAATGAACAAAACCCTACTGGAAAGGCTACTGCCAGCGCTGTCCCTCAACACTGGCAACCAAACA GTGGCCTTCTTATGAACAATGATGTAGCAGGTGTAAACCTAGAAGAAGCCTTCCCTTGTATAGCACTCTCGAAGAACGACTCGTACGTAATGTCAGCAGC TGGAGGGAAGGTTTCACTGTTCAACATGATGACTTTCAAGGTAATGACAACGTTCATGTCTCCTGCTCCTGCCTCTACTTTCCTGGCATTCCATCCTCAG GACAACAATATCATAGCCATTGGTATGGAGGATTCAACAATCCACATTTACAACGTCAGAGTAGATGAGGTGAAAACGAAGTTGAAGGGACACCAGAAGC GAATATCCGGATTAGCTTTCTCCACCAGTCTTAATGTCTTGGTCTCATCTGGTGCTGATGCTCAACTTTGCATTTGGAGTATTGACTCATGGGACAAGCG GAAAACAGTTCCGGTTCAGATCCCAGCGGGAAAGGCACAAACTGGGGAAACTCGAGTGCAGTTCCACTCGGATCAGATTCGCCTGCTGGTTGTCCATGAG TCGCAGCTGGCCATATATGATGCCTCCAAAATGGAATGCGTTCGTCAGTGGAAGCCACACGATGGAATCTCCGCACCAATATCTAATGCATCATACTCCT GCAACAGCCAGTTAATCTACGCAACTTTCTGCGATGGTAGCGTCGGAGTGTTCGATGCCGATACTCTAAGGCTACGATGCCGCATTGCTCCATCAGCTTA TCTCCCTCAGTCCGTCTTGAGCGGGACCCAGCCGGTCTACCCATTGGTTGTGGCTGCCCACCCGCAGGAGCCGAACCAGTTAGCCATCGGGTTGACAGAT GGAACAGTGAAAGTGATGGAGCCAACCGAGTCGGAGGCGAAATGGGGTTCGTCTCCTCCTGCCGATAATGGGATTCTGACCACTTCGTCATCCACGACGA GCAACCACACACCTGATCAGTTGCAAAGATGA
AA sequence Show only first row Show all	>Lus10020668 pacid=23140964 polypeptide=Lus10020668 locus=Lus10020668.g ID=Lus10020668.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFDEKVQAGEWDEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDKQDKAKAVEILVGD LKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKASRLRTLINQSSILDLTSGPSSLNWQHQLCKNP RSNPDIKTLFIDHTCTPSNGPLVPGPVSLPVAAVAKPVAYTSLGAHGPFPPAAAAANPGALAGWMANASASSSVQAAVVTASSIPVPQNQVSVMKRPRTP PTASGMVEYPGPDHELMKRLRPPQSVEETEKITFQVTYPTSQRWSLDDLPRTVALVMQQGSTVMSMDFHPSYHTLLLVGSANGEITLWELVLRQRLISKP FKVWEMQSCSLQFQASMVKDTPIAVTRVAWSPDGNFIGVAFSKHLVHLYSYIGSNDLRQHLEIDAHGGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLTG KKVFHFEGHEAPVYSICPHHKESIQFIFSTDVDGKIKAWLYDNMGSRVDYDAPGRWCTTMLYSADGSRLFSCGTSKEGESYLVEWNESEGAIRRKYSGFG KKSAAGVAQFDTTQNHFLAVGEDGRIKFWDMDDTSMLTSTEADGGLPAVPRLRFSKDGKLLAVMTADNGFKILANGAGLRSLRAVENPPFEALRSPVESI SVKPSVASGVGNVSPLNLKVERSSPPRPSPVQNGVDPVNRNAEKPRAVEEALEKSKPWQLTEIVEPSACRMVTLPENPDTSSKVVRLLYTNSGVGILALG SNGIQKLWKWARNEQNPTGKATASAVPQHWQPNSGLLMNNDVAGVNLEEAFPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPAPASTFLAFHPQ DNNIIAIGMEDSTIHIYNVRVDEVKTKLKGHQKRISGLAFSTSLNVLVSSGADAQLCIWSIDSWDKRKTVPVQIPAGKAQTGETRVQFHSDQIRLLVVHE SQLAIYDASKMECVRQWKPHDGISAPISNASYSCNSQLIYATFCDGSVGVFDADTLRLRCRIAPSAYLPQSVLSGTQPVYPLVVAAHPQEPNQLAIGLTD GTVKVMEPTESEAKWGSSPPADNGILTTSSSTTSNHTPDQLQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10020668 [exp]	0	1
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	6.5	0.7497
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	7.2	0.7381
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	7.8	0.7674
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	23.1	0.7550
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	31.3	0.7223
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	36.6	0.6912
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036501 [exp]	36.8	0.6880
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	42.0	0.7233
AT1G17500			ATPase E1-E2 type family prote...		Lus10037622 [exp]	43.5	0.6796
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	46.6	0.6967

Compare expression of checked genes

Lus10020668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.