Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56260 129 / 9e-40 MDO1 MERISTEM DISORGANIZATION 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029875 [exp] 235 / 4e-81 AT1G56260 119 / 4e-35 MERISTEM DISORGANIZATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021800 [exp] 160 / 7e-52 AT1G56260 144 / 1e-45 MERISTEM DISORGANIZATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020669 pacid=23140881 polypeptide=Lus10020669 locus=Lus10020669.g ID=Lus10020669.BGIv1.0 annot-version=v1.0 ATGGCTGAGATTCAATCAGGAACTCCGGTGAATTTAGCTGAACTGTGTCCAGGATCTCCGTTCTTTAGAGACGGAGCTTCGGTCAGAGTCACTGGAAAGC TGGAAGACTACAACACTGAGACAGGTGTGGCTATAATGGTTGACGGCGATGCCAAACTCATGGTAGACACCCTGCATCTGAGGGAACTGAGCTTTCGAAC CGGCTCCACCTTCATGTTCATAGGTGAACTCCTCATAGGACCTGATAATGAGGCAGTTCTGAAGGCCCGGATCGGGAGGAATGTCGATGGCATTGACCTC GATCTCTACCGTCAGTCTATGCAGCTATTACGGCAGTTCCAAAACGACTACCCGAACCTGAATCAGACCGAGAATCGAACCCCCTAG
AA sequence Show only first row Show all	>Lus10020669 pacid=23140881 polypeptide=Lus10020669 locus=Lus10020669.g ID=Lus10020669.BGIv1.0 annot-version=v1.0 MAEIQSGTPVNLAELCPGSPFFRDGASVRVTGKLEDYNTETGVAIMVDGDAKLMVDTLHLRELSFRTGSTFMFIGELLIGPDNEAVLKARIGRNVDGIDL DLYRQSMQLLRQFQNDYPNLNQTENRTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10020669 [exp]	0	1
					Lus10033890 [exp]	2.4	0.9372
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	4.7	0.9338
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	6.1	0.8943
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	6.3	0.9201
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	7.3	0.9298
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10007502 [exp]	7.9	0.8962
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	8.5	0.9195
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	10.1	0.9074
AT2G39440			unknown protein		Lus10018300 [exp]	11.7	0.9216
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	12.0	0.9077

Compare expression of checked genes

Lus10020669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.