Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27930 249 / 2e-82 Protein phosphatase 2C family protein (.1.2) AT3G05640 231 / 1e-75 Protein phosphatase 2C family protein (.1.2) AT3G16800 151 / 4e-45 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 110 / 1e-28 Protein phosphatase 2C family protein (.1) AT3G02750 108 / 7e-28 Protein phosphatase 2C family protein (.1.2.3) AT4G03415 107 / 1e-27 Protein phosphatase 2C family protein (.1.2) AT1G79630 108 / 2e-27 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 100 / 5e-25 Protein phosphatase 2C family protein (.1) AT1G16220 99 / 3e-24 Protein phosphatase 2C family protein (.1) AT5G01700 89 / 6e-21 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029874 [exp] 355 / 3e-124 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 251 / 3e-83 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 239 / 2e-78 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 189 / 1e-58 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 188 / 2e-58 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 131 / 2e-36 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10037431 [exp] 129 / 2e-34 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10041277 [exp] 127 / 4e-34 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10021486 [exp] 124 / 7e-34 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012200 [exp] 261 / 2e-87 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 253 / 3e-84 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 198 / 9e-63 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 196 / 6e-62 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 129 / 3e-35 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 127 / 2e-34 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 115 / 4e-30 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 113 / 2e-29 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 112 / 5e-29 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 102 / 2e-25 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020670 pacid=23140809 polypeptide=Lus10020670 locus=Lus10020670.g ID=Lus10020670.BGIv1.0 annot-version=v1.0 ATGGGGCATCTTTCTGCAATGTTCAAGCTGGCAAGGTCGCTGTCAATGAGAAAAGGGAAGAACTTTACTGGAGATAGAGATGGTAGAGATACTGCTAAAG CAATGGAGAAAGAAGCTAAGAAGAATGAGCTGATATTGAGATCCTCTGGCTGTGTTCATGTAACTGGTTCTAAGAATCTGGCCTCCCTTTTTTCTAAAAG AGGTGAAAAGGGTGTTAATCAGGATTGCTTCATCTTTTGGGAGGAATTCGGGTGCCAAGAAGACATGACATTCTGTGGGATATTCGACGGTCATGGTCCG TGGGGACACTTTGTAGCCAAGAAAGTTAGGGAGTCACTGCCATCATTCCTTCTATGTAACTGGCAGGAGTTCCTTGCTGAACACTCTATTGATCTGCTCG ACGATGAAATTGACTTGGGGTCGGACAAGAAGCTGCAGAGATTCAATATATGGAGGCATTCTTATCTGAAGGCGTGTGCCTCTGTCGATCGGGAGCTCGA GCAGCATCGGAAGATCGATTCTTTCCATAGTGGCACTACTGCATTGACCATTGTTAGACAGGCAAGTTCATGA
AA sequence Show only first row Show all	>Lus10020670 pacid=23140809 polypeptide=Lus10020670 locus=Lus10020670.g ID=Lus10020670.BGIv1.0 annot-version=v1.0 MGHLSAMFKLARSLSMRKGKNFTGDRDGRDTAKAMEKEAKKNELILRSSGCVHVTGSKNLASLFSKRGEKGVNQDCFIFWEEFGCQEDMTFCGIFDGHGP WGHFVAKKVRESLPSFLLCNWQEFLAEHSIDLLDDEIDLGSDKKLQRFNIWRHSYLKACASVDRELEQHRKIDSFHSGTTALTIVRQASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	0	1
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	1.0	0.9149
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	3.2	0.8122
AT3G12350			F-box family protein (.1.2)		Lus10018673 [exp]	5.5	0.7171
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	6.6	0.7090
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Lus10013518 [exp]	8.8	0.7229
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	11.5	0.7728
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	11.8	0.7598
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	13.3	0.8018
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	14.7	0.7777
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	15.4	0.7860

Compare expression of checked genes

Lus10020670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.