Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05640 253 / 7e-84 Protein phosphatase 2C family protein (.1.2) AT5G27930 239 / 3e-78 Protein phosphatase 2C family protein (.1.2) AT3G16800 205 / 2e-65 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 199 / 2e-62 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 192 / 2e-59 Protein phosphatase 2C family protein (.1) AT1G16220 191 / 1e-58 Protein phosphatase 2C family protein (.1) AT3G02750 187 / 5e-57 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 186 / 9e-57 Protein phosphatase 2C family protein (.1) AT5G01700 181 / 5e-56 Protein phosphatase 2C family protein (.1.2) AT4G03415 182 / 3e-55 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029874 [exp] 315 / 2e-108 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 251 / 4e-83 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 250 / 8e-83 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 220 / 1e-70 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 219 / 2e-70 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10027122 [exp] 194 / 1e-59 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10000402 [exp] 194 / 2e-59 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10018570 [exp] 186 / 1e-56 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 186 / 1e-56 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021900 [exp] 266 / 6e-89 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 265 / 2e-88 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 252 / 2e-83 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 247 / 2e-81 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 204 / 2e-63 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 202 / 1e-62 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 202 / 1e-62 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G085500 [exp] 192 / 4e-59 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 189 / 5e-58 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 189 / 7e-58 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10020671 pacid=23140897 polypeptide=Lus10020671 locus=Lus10020671.g ID=Lus10020671.BGIv1.0 annot-version=v1.0 ATGAACCTCTTCCAACAACTCGAGCTATCGGGATTAAATGTCTCTTTGATGTTTGAACAGGGAGAGCTTCTATATATAGCAAATGTTGGAGACTCAAGAG CTGTGCTGGCTACAACTTCAGATGACGATCATGGAAGTTTGGTCGCAGTTCAGCTCACTGTCGATTTCAAGCCTAGTCTACCTCAGGAAGCAGAGAGGAT AGTGGAATGCAAAGGGAGAGTGTTCTGCCTATCGGACGAACCGGGTGTTCAGAGGGTATGGCTACCGCACGAGGAGTCCCCGGGGCTAGCGATGTCGAGA GCGTTTGGGGACCATTGTGTTAAGGATTTCGGTCTCATTTCCGAGCCAGAAGTAACACAGAGGCACATCTCTAGTAAAGACCAGTTTGTGATCATGGCCA CTGATGGAGTGTGGGATGTGGTGTCTAACCAGGAAGCAGTGCAGATCGTGTCGTCCACTCCTGACCGATCGAAAGCCGCTAAGTGTCTGGTGAAGGCTGC CGCGAAAGCTTGGAGACGGAAGAGGAAAGGGATCGCCATGGATGATATCTCAGCTGCTTGCTTGTTCTTGCATTCTCCTCCTCATTTATGTCACCAAATT GTAACCACGAAGATGGTTTGA
AA sequence Show only first row Show all	>Lus10020671 pacid=23140897 polypeptide=Lus10020671 locus=Lus10020671.g ID=Lus10020671.BGIv1.0 annot-version=v1.0 MNLFQQLELSGLNVSLMFEQGELLYIANVGDSRAVLATTSDDDHGSLVAVQLTVDFKPSLPQEAERIVECKGRVFCLSDEPGVQRVWLPHEESPGLAMSR AFGDHCVKDFGLISEPEVTQRHISSKDQFVIMATDGVWDVVSNQEAVQIVSSTPDRSKAAKCLVKAAAKAWRRKRKGIAMDDISAACLFLHSPPHLCHQI VTTKMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	0	1
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	1.0	0.9149
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	2.4	0.8321
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	3.0	0.8221
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	3.2	0.7841
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	6.9	0.7835
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	8.2	0.7281
AT5G51040			unknown protein		Lus10043024 [exp]	10.4	0.7945
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	12.0	0.7593
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	12.0	0.7234
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	12.7	0.7691

Compare expression of checked genes

Lus10020671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.