Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16785 1328 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT3G05630 1327 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT5G25370 120 / 1e-27 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G35790 109 / 4e-24 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT4G00240 103 / 2e-22 PLDBETA2 phospholipase D beta 2 (.1) AT1G52570 101 / 1e-21 PLDALPHA2 phospholipase D alpha 2 (.1) AT2G42010 100 / 3e-21 PLDBETA1 phospholipase D beta 1 (.1) AT3G15730 100 / 4e-21 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G55180 98 / 1e-20 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT4G11830 96 / 7e-20 PLDGAMMA2 phospholipase D gamma 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029873 [exp] 1801 / 0 AT3G16785 1199 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10016830 [exp] 1354 / 0 AT3G16785 1586 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10037708 [exp] 736 / 0 AT3G16785 885 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10041787 [exp] 105 / 1e-22 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10039806 [exp] 104 / 2e-22 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10026375 [exp] 103 / 3e-22 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10036361 [exp] 103 / 4e-22 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10018575 [exp] 103 / 5e-22 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10012699 [exp] 102 / 7e-22 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012300 [exp] 1535 / 0 AT3G16785 1437 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.008G211100 [exp] 1396 / 0 AT3G16785 1622 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.010G006300 [exp] 1355 / 0 AT3G16785 1607 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.005G105600 [exp] 107 / 2e-23 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 107 / 2e-23 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 102 / 7e-22 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 102 / 9e-22 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 101 / 1e-21 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 101 / 1e-21 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.006G253900 [exp] 100 / 3e-21 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif
Representative CDS sequence Show only first row Show all	>Lus10020672 pacid=23140870 polypeptide=Lus10020672 locus=Lus10020672.g ID=Lus10020672.BGIv1.0 annot-version=v1.0 ATGTCAACGGCGGCGGCGGCGAGGGAGCCACTCCTCGGCAGCAACGGAGCAAAGTATTACTCCGACGACGGTAAACCACCGGCGTCGACATTGCTTTACC AGTCGTGTTCCTTCCGGCAGTTCCCGGAGCCAGGCTGGATTTTTGACGAATTGCCCAAAGCTTCGATTGTTTCCGTGTCCAGACCCGACACAGGGGATAT AAGTCCCATGTTGTTGTCCTACACCATTGAGTTGCAGTACAAACAGTTCAAATGGGTACTGGTGAAGAAAGCTTCCCAGGTTCTGTTCTTGCACTTTGCT TTGAAGAAACGTGTGCTCATTCAAGAACTTCACGAGAAGCAAGAGCAGGTCAAAGAATGGCTGCACAGCTTGGGGATAGTGGATCATCAAGTAGCAGTAA CACAAGATGCTGGGGAGCCTGATGATGGAGCAGTTCCTTTACACCACGAAGATACTACTGTTCGAAGCAGAAATGTGCCCTCAGCTGCTGCATTGCCCAT CATTCGTCCAACATTAAGAGGGCAGCAACCGATTTCGGAAAAAGCCAAAGTGGCAATGCAGAACTACTTGAACCATTTCCTTGGAAGTATGGACATTGCC AACTCTAGAGAGGTAAGCAAATTTCTCGAGGTATCTAAGATGTCGTTTTCGAGGGAGTATGGTCCGAAGTTGAAAGAAGGGTATGTCATGGTGAAGCATG TCTCCTCGAGTGCCTCGAGGGACAGCAATGCTGGTAGAAATTGCTGCCCCTGCCAATGGTTTTCTTGTTGTAACAACAGTTGGCAAAAGGTTTGGGCAGT TTTGAAACCCGGGTTCTTAGCCTTCCTGCAAGACCCTTTTGACACCAAGCTCTTAGACATTGTTGTCTTTGACATTCTAAGTGAAGGTGAAGGAGGATCA CAAACACTACTGGCAAGTCAGACTAAGCAGCGAAATCCTTTACGCTACGCGTTTCAGGTTTCCTCCGGTAATCGGAGCATAAGAGTAAGAACAACAAGTA CTGACAAAGTCAAAGGATGGATCGCTGCTATAAATGATGCTTCGTTAAGGCCGGTTGATGGCTGGTGTCATCCTCACCGGTTCGGTTCCTTTGCTCCTCC AAGGGGTCTAACCAATGATGGAAGCCAAGCTCAGTGGTTCATTGATGGTGAAGCATCTTTTGAAGCAATTGCTTCAGCTATTGAGGATGCAAAATCTGAG ATATTCATTACTGGCTGGTGGCTTTGCCCTGAACTGTATCTAAGGAGGCCTTTCGAGAATCATCCTACTTCTAGGCTTGATTCCTTACTTGAAGCCAAAG CCAAACAAGGTGTGCAGATATACATTCTTCTATACAAGGAGGTGTCCATTGCTCTCAAGATCAACAGCTCTTACAGCAAGAAAAGGCTTCTCGACATACA CGAGAATGTTAAAGTGCTCCGGTATCCTGACCATCTCGCAACCGGTGTCTATCTATGGTCTCACCATGAAAAGCTCGTAATCATCGACTACCAAGTTTGT TTCATTGGGGGATTAGATTTATGTTTTGGCCGTTATGACACCATTGAGCATAGAATCGGTGATCATCCTGCTCATGTATGGCCCGGGAAAGACTACTACA ATCCGAGAGAGATTGAACCCGATTGTTGGGAGGACATGATGAAAGATGTGCTAGATCGGAGTAAGTATCCGCGAATGCCATGGCATGATGTCCAATGTGC TATATGGGGGCCTCCTTGCCGCGACATTGCCAGACACTTCGTTCAACGATGGAACCATGCCAAGAGAAGCAAAGCTCCACACGAGCAAGGAATTCCACTG CTGATGCCTCATCACCACATGGTTCTCCCTCATTATTTGGGAAGAAGCAATGATATAGACATTGACAGCAATCTCGTCGAACACGACAAGGAAAAAGACA TGAACAGACAAGACTCATTCTTGTCGTTATCATTATCCCCGTTCGAAGACGTGCCATTGCTCTTGCCTCAGGAAGCAGACGATAAGGTTGATGACTTACT TGCTGATCACTCAACTGAAGCAAGGGAACCGATATCCTTTTCCTTCCAGAATCCGAAAGTTGAGTCAACAGCATCAGTAGATGAACTTGATTTCATGGAT ATACACAGTAACAAGCAGTTATCAGATGAATTGTCAGAAGTGTCCAGCGAAGACAACGGTCATGTTAAAGTCCCTTCCTTTGGTGGTTACGAACAAATCG GTCCTCGTGTTCAATGTCATTGCCAGGTCATACGAAGTGTCGGTCAATGGTCAGCTGGAGCTAGCCATACTGAAGAAAGCATACACAATGCATATTGTTC TCTCATTGAAAAAGCAGAACACTTTATATACATAGAGAACCAGTTCTTCATATCAGGTCTTAACGACGATGAAATTATCCAGAACCGTGTACTGGAAGCA TTGTACAGACGAATTCTGCGAGCACATGAAGAACAGAAGTGTTTTCGGGTTATCGTTGTCATACCGCTCTTACCAGGCTTCCAGGGAGGAATTGATGATG GCGGTGCGGCAACTGTACGAGCGATAATGCATTGGCAATATCGAACCATTTCAAGAGACAAAACATCTATACTGTATCATCTCAATGCTTTGCTAGACCA TAAAGCACAGGACTACATTTCCTTTTTCGGCCTAAGGACGTATGGTAGGCTTTCAGATGGAGGTCCCATTGCCACAAGTCAGGTGTATGTGCACAGCAAG GTTATGATAATCGACGATCGTTCTGCCTTCATCGGATCATCCAACATCAATGACAGAAGTTTGCTCGGATCTAGAGACTCCGAGATCGGGGTGTTGATCG AAGATAAGGAGTTCGTCGAGTCATCCATGGATGGGAAGCCCTGGAGAGCTGGCAAACTTTCATACAGCTTGAGGTGTTCGCTTTGGTCCGAGCATCTTGG CATTAACTCGGATGAGGTTGATAAGATTTCCGATCCAGTGACAGACTCGACGTACAAGGACTTATGGCTAGCAACTGCTGAGGAAAATGCTAAGATATTC CAAGAAGTATTTGCTTGTCTTCCCAATGATGTAATCCATTCAAGGTCTGCTTTGAGGCAGAACATGAACCACTGGAGGGAGAAGCTCGGTCACACCACAA TCGATCTTGGCATAGCTCCCGATGAGATGCAACATGTCGAGAATGGAGAAAGGAGGACTGTGGAGACAACAGAAAGACTGAAATTGGTGAGGGGACACCT TGTTTCCTTCCCCTTGGGGTTCATGCAACAAGAGGACCTGAGACCTGTTTTTAACGAGAGCGAGTTCTACACATCACCTCGTGTCTTTCATTAG
AA sequence Show only first row Show all	>Lus10020672 pacid=23140870 polypeptide=Lus10020672 locus=Lus10020672.g ID=Lus10020672.BGIv1.0 annot-version=v1.0 MSTAAAAREPLLGSNGAKYYSDDGKPPASTLLYQSCSFRQFPEPGWIFDELPKASIVSVSRPDTGDISPMLLSYTIELQYKQFKWVLVKKASQVLFLHFA LKKRVLIQELHEKQEQVKEWLHSLGIVDHQVAVTQDAGEPDDGAVPLHHEDTTVRSRNVPSAAALPIIRPTLRGQQPISEKAKVAMQNYLNHFLGSMDIA NSREVSKFLEVSKMSFSREYGPKLKEGYVMVKHVSSSASRDSNAGRNCCPCQWFSCCNNSWQKVWAVLKPGFLAFLQDPFDTKLLDIVVFDILSEGEGGS QTLLASQTKQRNPLRYAFQVSSGNRSIRVRTTSTDKVKGWIAAINDASLRPVDGWCHPHRFGSFAPPRGLTNDGSQAQWFIDGEASFEAIASAIEDAKSE IFITGWWLCPELYLRRPFENHPTSRLDSLLEAKAKQGVQIYILLYKEVSIALKINSSYSKKRLLDIHENVKVLRYPDHLATGVYLWSHHEKLVIIDYQVC FIGGLDLCFGRYDTIEHRIGDHPAHVWPGKDYYNPREIEPDCWEDMMKDVLDRSKYPRMPWHDVQCAIWGPPCRDIARHFVQRWNHAKRSKAPHEQGIPL LMPHHHMVLPHYLGRSNDIDIDSNLVEHDKEKDMNRQDSFLSLSLSPFEDVPLLLPQEADDKVDDLLADHSTEAREPISFSFQNPKVESTASVDELDFMD IHSNKQLSDELSEVSSEDNGHVKVPSFGGYEQIGPRVQCHCQVIRSVGQWSAGASHTEESIHNAYCSLIEKAEHFIYIENQFFISGLNDDEIIQNRVLEA LYRRILRAHEEQKCFRVIVVIPLLPGFQGGIDDGGAATVRAIMHWQYRTISRDKTSILYHLNALLDHKAQDYISFFGLRTYGRLSDGGPIATSQVYVHSK VMIIDDRSAFIGSSNINDRSLLGSRDSEIGVLIEDKEFVESSMDGKPWRAGKLSYSLRCSLWSEHLGINSDEVDKISDPVTDSTYKDLWLATAEENAKIF QEVFACLPNDVIHSRSALRQNMNHWREKLGHTTIDLGIAPDEMQHVENGERRTVETTERLKLVRGHLVSFPLGFMQQEDLRPVFNESEFYTSPRVFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	0	1
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	2.4	0.8714
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	3.2	0.8420
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	4.6	0.8252
AT5G59070			UDP-Glycosyltransferase superf...		Lus10040757 [exp]	6.2	0.7756
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020468 [exp]	8.7	0.8145
AT5G05250			unknown protein		Lus10030528 [exp]	16.2	0.7770
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	17.5	0.7743
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	17.9	0.8190
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	23.2	0.8141
AT1G60460			unknown protein		Lus10041115 [exp]	25.8	0.7428

Compare expression of checked genes

Lus10020672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.