Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56240 238 / 5e-78 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 232 / 2e-75 ATPP2-B14 phloem protein 2-B14 (.1) AT1G09155 229 / 1e-74 ATPP2-B15 phloem protein 2-B15 (.1) AT5G24560 170 / 1e-51 ATPP2-B12 phloem protein 2-B12 (.1) AT1G80110 167 / 2e-50 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02360 164 / 5e-49 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 162 / 9e-48 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02230 159 / 1e-46 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02250 153 / 2e-44 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 140 / 8e-40 ATPP2-B8 phloem protein 2-B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020674 [exp] 470 / 2e-169 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 458 / 1e-164 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 337 / 9e-117 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 338 / 2e-116 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10031473 [exp] 296 / 1e-101 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10015209 [exp] 277 / 2e-93 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10031472 [exp] 222 / 1e-72 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10042713 [exp] 199 / 4e-62 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 189 / 1e-58 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 323 / 2e-111 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 316 / 2e-108 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 194 / 2e-60 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 189 / 3e-58 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 184 / 2e-56 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 173 / 3e-52 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 172 / 5e-52 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 160 / 1e-47 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 121 / 7e-34 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.015G138600 [exp] 97 / 3e-23 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020673 pacid=23140819 polypeptide=Lus10020673 locus=Lus10020673.g ID=Lus10020673.BGIv1.0 annot-version=v1.0 ATGGAGTTGGTCAACGCCATCCCTGAAGACTGTCTCTCTGCAATCCTCTGTTTCACTTCCCCACAAGACGCCTGCCGGTCGTCGGCCGTCTCCGCCGCCT TCCAATCCGCCTCCGCCTCCGACGCCGTCTGGGAGCGCTTCTTACCCTCTGATTACCGCCGCATTGTCTCCGGTTCCGTCCCTCCGGTTCAATTCTCCTC CAAGAAGGATCTCTTCCGCCGCCTCTGCGACTCTGTTTTCATCGACGGCGGCCTCAAGAGGTTTAAGCTGGAGAAATCGACCGGGAAGAAATGTTACGAA TTGTCCGCCAGAGACCTTTCCATAACTTGGAGCAACGAATCAATGTACTGGAATTGGACTTCTAGACCCGATTCAAGGTTCTCGGAAGTGGCGGTACTAA GAACAATGTCCTGGCTAGAAATCGAAGGCAAGATCAGCACCCAAATGCTAACACCCAACACAAAGTACGGAGCTTTCTTAATCATGAAGATCTCAGACCA GGGATTCGGGCTCGATTTGATGCCTTCGGAGACGTCGGTTCAGGTTGGCAGTACGGTGGTCTGTAGTAGCAACACGGCGTACCTCCGGCGCCACGGGCAA GACAGCCATGTAAGGATGATGGAGAGGCTGATGTACGGACACCGGACGGAGGTGTTGAAATCGATGGTGGGCGGCGGAGGCGAAGGAGAAAGGAGGTTGC CGTCGGAGAGAGAGGATGGGTGGTTGGAGATTGAGATTGGGGAGTTTTGTAGTGGTGAATGCGGTGGTGAGGAAGTGAAGATGAGTTTGAAGGAAGTGAA GGGGAATCATTTGAAAGGTGGGCTAATTGTTGACGGAATTGAAGTTAGGCCTAAACACTAA
AA sequence Show only first row Show all	>Lus10020673 pacid=23140819 polypeptide=Lus10020673 locus=Lus10020673.g ID=Lus10020673.BGIv1.0 annot-version=v1.0 MELVNAIPEDCLSAILCFTSPQDACRSSAVSAAFQSASASDAVWERFLPSDYRRIVSGSVPPVQFSSKKDLFRRLCDSVFIDGGLKRFKLEKSTGKKCYE LSARDLSITWSNESMYWNWTSRPDSRFSEVAVLRTMSWLEIEGKISTQMLTPNTKYGAFLIMKISDQGFGLDLMPSETSVQVGSTVVCSSNTAYLRRHGQ DSHVRMMERLMYGHRTEVLKSMVGGGGEGERRLPSEREDGWLEIEIGEFCSGECGGEEVKMSLKEVKGNHLKGGLIVDGIEVRPKH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	0	1
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	1.4	0.9748
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	5.5	0.9572
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	6.7	0.9499
AT2G32235			unknown protein		Lus10013126 [exp]	7.7	0.9366
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020674 [exp]	7.9	0.9039
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	9.2	0.9341
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	11.2	0.9405
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	12.0	0.9473
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	13.2	0.9436
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	14.1	0.9247

Compare expression of checked genes

Lus10020673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.