Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56240 246 / 4e-81 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 243 / 4e-80 ATPP2-B14 phloem protein 2-B14 (.1) AT1G09155 232 / 2e-75 ATPP2-B15 phloem protein 2-B15 (.1) AT5G24560 185 / 2e-57 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02360 183 / 9e-57 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02230 182 / 3e-55 ATPP2-B1 phloem protein 2-B1 (.1) AT1G80110 179 / 3e-55 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02240 179 / 2e-54 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02250 170 / 5e-51 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 151 / 7e-44 ATPP2-B8 phloem protein 2-B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029872 [exp] 478 / 2e-172 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 451 / 1e-161 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10031484 [exp] 347 / 5e-120 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10015208 [exp] 345 / 8e-120 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031473 [exp] 284 / 1e-96 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10015209 [exp] 258 / 6e-86 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10042713 [exp] 215 / 2e-68 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10031472 [exp] 202 / 8e-65 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10029674 [exp] 205 / 9e-65 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 336 / 1e-116 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 329 / 8e-114 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 213 / 7e-68 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 213 / 1e-67 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 195 / 8e-61 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 191 / 3e-59 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 179 / 9e-55 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 177 / 1e-54 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 140 / 3e-41 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.014G075800 [exp] 96 / 4e-23 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020674 pacid=23140924 polypeptide=Lus10020674 locus=Lus10020674.g ID=Lus10020674.BGIv1.0 annot-version=v1.0 ATGGAGTTAGTCAACGCCATCCCTGAAGACTGTCTCTCTGCAATCCTCTGTTTCACTTCCCCACAAGACGCCTGCCGTTCATCGGCCGTCTCCGCCGCCT TCCAATCCGCCTCCGTCTCCGACACTGTCTGGGAGCGCTTCTTGCCCTCCGATTACCGCCGCATTGTCTCCGGTTCCGTCCCGCCGGTTGAAGTCTCCTC CAAGAAGGAACTCTTCCGCCGCCTATGCGACTCTATTCTAGTCGACGGCGGCCTTAAAAGGTTTAAGCTGGAGAAATCAACCGGGAAGAAATGTTACGAA TTGTCCGCCAGAGACCTTTCCATAACTTGGAGCAACGAATCAATGTACTGGAACTGGACCTCAATACCCGAATCAAGGTTCTCGGAAGTGGCGGTACTAA GAACAATGTCGTGGCTAGAAATCGAAGGCAAGATCAGCACCCAAATGCTAACTCCAAACACAAAGTACGGAGCTTTCCTAATCATGAAGATCTCCGACCA GGCATTTGGGCTCGATTTGATGCCGTCGGAGACGTCGATTCAAGTTGGTGGTACGGTGGTCTGTAGAAGCAACACGGCGTACCTCCGGCGCCACCGGCAG AACAGCCACGTGGGGATGATGGAGAGGCTGATGTACGGACACCGGACTGAAGTGTTGAAATCGACGGTGGAAGGCGGCGGAGGGGAAAGGAGGTTGCCGG CGGAGAGAGAGGATGGGTGGTTGGAGATTGAGATTGGGGAGTTTTTTAGTTGTGATTGCGGTGGTGAGGAAGTGAAGATGAGTGTGAAGGAAGTGAAGGG ACATCATTTGAAAGGTGGGCTAATTGTTGAAGGAATTGAAGTTAGGCCTAAACACTAA
AA sequence Show only first row Show all	>Lus10020674 pacid=23140924 polypeptide=Lus10020674 locus=Lus10020674.g ID=Lus10020674.BGIv1.0 annot-version=v1.0 MELVNAIPEDCLSAILCFTSPQDACRSSAVSAAFQSASVSDTVWERFLPSDYRRIVSGSVPPVEVSSKKELFRRLCDSILVDGGLKRFKLEKSTGKKCYE LSARDLSITWSNESMYWNWTSIPESRFSEVAVLRTMSWLEIEGKISTQMLTPNTKYGAFLIMKISDQAFGLDLMPSETSIQVGGTVVCRSNTAYLRRHRQ NSHVGMMERLMYGHRTEVLKSTVEGGGGERRLPAEREDGWLEIEIGEFFSCDCGGEEVKMSVKEVKGHHLKGGLIVEGIEVRPKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020674 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	7.9	0.9039
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	13.0	0.8381
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	18.6	0.8660
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	23.9	0.8684
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	40.1	0.7744
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	40.3	0.8611
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	45.9	0.8583
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	49.0	0.8371
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	55.3	0.8388
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10004992 [exp]	55.7	0.8409

Compare expression of checked genes

Lus10020674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.