Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56230 723 / 0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) AT2G22660 130 / 2e-31 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) AT4G37900 126 / 1e-29 Protein of unknown function (duplicated DUF1399) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029871 [exp] 1406 / 0 AT1G56230 771 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10019239 [exp] 126 / 2e-29 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10004273 [exp] 121 / 4e-28 AT2G22660 679 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013000 [exp] 942 / 0 AT1G56230 777 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Potri.015G042800 [exp] 123 / 1e-28 AT4G37900 795 / 0.0 Protein of unknown function (duplicated DUF1399) (.1) Potri.002G108900 [exp] 122 / 2e-28 AT2G22660 696 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07173 [flax] [poplar] GRDP-like Glycine-rich domain-containing protein-like
Representative CDS sequence Show only first row Show all	>Lus10020675 pacid=23140850 polypeptide=Lus10020675 locus=Lus10020675.g ID=Lus10020675.BGIv1.0 annot-version=v1.0 ATGCCGGCGACTGAGAATGGACCCACCTCCTCCTCCTCCGCCAGACTAATCAACTCCTCCGACCACTTCTCCTCCACCAGATCCTTCGCCGACCTTCCGG AGGTCCAGTCCATCCGTCTCAGCTTTGACATCGTCTCTGCTGCCCGAAGGAACATCGGGTTCTTGAGGAACGTCGACGAATCGCTCTGGATTCACGAGCC TGCCTACCTAGCTGAAGCTGTACGAAGGTATGATGAGCTTTGGATGCCGTTGGTTTCTGAGTTGATGATCAACGGGAGTAGTAGCAATGTTGGGTCGACG GCTCCGATGGTGCTTCCTCCTTTTGATGTTGAGTGGGTCTGGTTCTGTCACTCTTTGAATCTGCTTTTCCAGAGAAGTTACAGGCAGTACTGCGAGCAGC GATTCTCGAGGCTAATCGGGAAGCCATCGATCTTTGACGAGGTAAACGAAGAGTATGCTTTGAACAGATGTAAACAGCTATGGCTTCAAAAGTACCCAAA TCAGCCATTTGAGAACGAGGCGTTCGAGTCAACATTACCTACCAATTGTGCACAAGAAGAACTGATCAAGGAGGTGAAGAAGAACAGAAACATCTACAAG AGGTTCTGTTGGCCTCACATGTCCGAAATCGTGTACCTGATCGCTGCTAAGCAGCGGTACAAGGGCTTCTTGTTCTTGTTGCGGAGTTACATTGAAGGTG GTTCCAGCTCGTCTTCCTCGTGTTCGAAATTGGTTCCGAGCTTGGACATCTTGCTAATGTGGATCACACACCAGAGTTACCCTACAGTATATGCACAAGA TTTGAAAGAGATGGAAGCTTCTGATATGGTTGAAATGGTGGTGGGATTGTGGGACACAGCTAAAGAAAAACATGTGCAAGAAACAAAAAACTTGTGGGAC AAGGTATTCGATCAACCCTACGAAAAGGCTGGTGGAGCCGTCGAATTCAGTAGGCTTAGCACTGAAATAATAAAGCAGCCACCAGTTTACTGGCAAGTCT CTGATAGTGATGTCAACACCAAGTACAAGTCCCTCCTCCCCAGATTCCTCCTCGAGACCTGTGTTTTTGTGAGGCTCAGCTCTGGGAACTCCGATCATAT TAGGACAATGAAAGACGAAGTTATAACGAAGAACAAGTTCCTGCGGGTGAGAATGGTTAGATGTCACAAGGAGCTGAAGATCGATAACCCCGGTGCCAGT TTCCTCTACGAATCGTGGAGGAAGCTGGGACCGTCGTTGTACTGTGAGTTCGGGACGAGAGGGGTTGTAGTCGAGCTTCGCAGGAAGGGAGGAGGGATCT GTTTCAAGTCGACCAAAGTGGATGATAGCGCTACGTTTCTATGGAGCGATTTGCTTAGAGCTCCGTCTCTTAGCTTGGAGAGGAAGATTGGGGACGGATT CAGGGTGGTTGCTTCGATGACGCCTCCTGCCCAAGCTCCTTACCTTTTGAAATGTGTTCCTGATCGGGTGACTGATGATTCGGGGGCTATGATCTCGGAT GTGATCCTGAGGATGAACAATTACAAGCCTCAGGAAGGCAGGTGGCTGTCTAGAACTGTTCTTGATCACGCTGGGAGGGAGTGTTTCGTTGTGAGAATGA GAGTGGGAGGTGGGTTTTGGAGGAGAGGAGGTGAAACACCTTCAACAGTGAAACGGGACGACAGGATTGTCGAAGTTCGTGAAGGGTCTTGGTCCTACGT CGCTGGCTCCATCGGTAGAGCACCTGAGAAAGTAGTTGGAACAGCAACACCTAAGGAACCTCCAGAGGATTGGGAAGTTGCTTGGCTTTTCTCAACCGGG GAGGAGCTTCTAGTTTCCAGTAGATCATCATCGTCTTCCAATTCTATCCACGATCTTAGATTCCGCTTCTCAAACCAATCATCATCATCATCGGTAAGGC TATTGACAGGAAGGAAGATGGAGTACAACGCAAGCAACAACGAAGAACAAGAAGAAGCAGAATCGGGGTTCGTAACGTTGGTTCGATACACAGAAGACGA TCCGATAGGAAAGGCAACAGCTTTACTAAACTGGAAGCTCCTGATCATGGAGTTACAACCCGAGGAAGATGCAGTCTTGGTCCTTCTAATCTGCATTGCC ATCGTGAGAAGTGTGTCCGAAATGAGGAAGGAAGATGTCGGGAAGTTGCTCATCAGGAGGAGGGTTAAGGAAGCTAAACTGGGAGATAGAGATTGGGGTT CGGTCATCATGGATCATTCGGACTTAGTTTCATGTTCTTCATCTTCGTCCGCTTACCTCCAGCCATGGTACTTGAACGACAATGTGAAGATCACGGTGTG TTCTGATCGAGGAGAGAACGGTCTCAGCAGCCATCATCAACAGCCGGTTGCGAGCTATTCTTTGGTTGAAGGTGCGGATAAGTTGTATAAGAAAGGGATC ATAATGTGA
AA sequence Show only first row Show all	>Lus10020675 pacid=23140850 polypeptide=Lus10020675 locus=Lus10020675.g ID=Lus10020675.BGIv1.0 annot-version=v1.0 MPATENGPTSSSSARLINSSDHFSSTRSFADLPEVQSIRLSFDIVSAARRNIGFLRNVDESLWIHEPAYLAEAVRRYDELWMPLVSELMINGSSSNVGST APMVLPPFDVEWVWFCHSLNLLFQRSYRQYCEQRFSRLIGKPSIFDEVNEEYALNRCKQLWLQKYPNQPFENEAFESTLPTNCAQEELIKEVKKNRNIYK RFCWPHMSEIVYLIAAKQRYKGFLFLLRSYIEGGSSSSSSCSKLVPSLDILLMWITHQSYPTVYAQDLKEMEASDMVEMVVGLWDTAKEKHVQETKNLWD KVFDQPYEKAGGAVEFSRLSTEIIKQPPVYWQVSDSDVNTKYKSLLPRFLLETCVFVRLSSGNSDHIRTMKDEVITKNKFLRVRMVRCHKELKIDNPGAS FLYESWRKLGPSLYCEFGTRGVVVELRRKGGGICFKSTKVDDSATFLWSDLLRAPSLSLERKIGDGFRVVASMTPPAQAPYLLKCVPDRVTDDSGAMISD VILRMNNYKPQEGRWLSRTVLDHAGRECFVVRMRVGGGFWRRGGETPSTVKRDDRIVEVREGSWSYVAGSIGRAPEKVVGTATPKEPPEDWEVAWLFSTG EELLVSSRSSSSSNSIHDLRFRFSNQSSSSSVRLLTGRKMEYNASNNEEQEEAESGFVTLVRYTEDDPIGKATALLNWKLLIMELQPEEDAVLVLLICIA IVRSVSEMRKEDVGKLLIRRRVKEAKLGDRDWGSVIMDHSDLVSCSSSSSAYLQPWYLNDNVKITVCSDRGENGLSSHHQQPVASYSLVEGADKLYKKGI IM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56230			Protein of unknown function (D...		Lus10020675 [exp]	0	1
AT4G12410			SAUR-like auxin-responsive pro...		Lus10004337 [exp]	16.4	0.6283
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	24.7	0.6455
AT1G48580			unknown protein		Lus10009051 [exp]	25.5	0.6327
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10040242 [exp]	70.8	0.5849
AT5G24090		ATCHIA	chitinase A (.1)		Lus10001868 [exp]	95.7	0.5301
AT5G15880			unknown protein		Lus10003057 [exp]	98.5	0.5770
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	214.2	0.5189

Compare expression of checked genes

Lus10020675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.