Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05620 681 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 486 / 6e-168 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 483 / 1e-166 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT5G53370 435 / 5e-147 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 424 / 2e-142 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 405 / 5e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 403 / 1e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 404 / 6e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G43050 399 / 6e-134 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 399 / 1e-133 ATPMEPCRA methylesterase PCR A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029868 [exp] 1102 / 0 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 440 / 6e-145 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 427 / 3e-143 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 422 / 3e-142 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 406 / 2e-137 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 405 / 4e-137 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 405 / 9e-136 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 395 / 1e-131 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10022412 [exp] 401 / 5e-131 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022700 [exp] 800 / 0 AT3G05620 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013200 [exp] 792 / 0 AT3G05620 702 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 475 / 2e-163 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.012G014500 [exp] 455 / 1e-154 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 450 / 1e-152 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 437 / 5e-148 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 426 / 6e-144 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.015G127700 [exp] 417 / 7e-141 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 413 / 2e-139 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 413 / 2e-138 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10020677 pacid=23140860 polypeptide=Lus10020677 locus=Lus10020677.g ID=Lus10020677.BGIv1.0 annot-version=v1.0 ATGGCAGCCTTTCTCGTTTTCCTGTTCATTATAACCCTAGCACCACCTAACCTCCAAGCTTCCCCTGTTGCCACCACCACTTCGATCCCCATCGTCGAAC CGACATATGTCGTGCACAACTTCTCCGCCGAGTTGTGGATGCAGAGGGCATGTGCCGGAATCCGAGACCCTCAAACTTGCGTCTCAAGTCTCAGAGGCAG AGCTCCTTCTCAACAGAGGAAGAGCCCTGCCTCGATCGTGAATGCAGCAATCCGGAACACGCTCAAGGAAGCGAGGTCCGCCATCGACGCCATAACAAAG TTCACCGCCCTTTCGTTCAGCTACAGGGAGCAGCTGGCGGTCGAGGACTGCAAAGAATTGCTCGATTTCTCCGTCACCGAGCTCGCCTGGTCCCTCGCAG AGATGAACAGGGTTCGAGCTGGTACCGGTCTTCCCAGCTCGGAGGGAGGGAACCTCAAGGCGTGGCTCAGCGCTGCCCTGAGCAACCAGGACACGTGCCT CGAAGGGTTCGAGGGCACTGATAGGCATGTGGAGAAGTTCATCAGGGGGAGCCTGAAGCAAGTCACTCAGCTGATCGGCAATGTGTTGTCGTTGTACACC GAGCTACACGGATTGCCATTCCGGTCGCCTGTATCGCCCCATTCAAGTGCTGAGTTCCCAGACTGGATGACAGAATCTGACCGGAAGGCGGTTAAAGGGA ATCCTGTTGACTTGCGGATTGATGCTGTCGTGGCCTTGGACGGGAGGGGCCATTTCAGAAGCATTGCCGACGCTGTCGACCGAGTTCCGCCCCATAGTAA CAGTCGATACGTTATCTTCATCAAGAAAGGAATCTACCATGAGAACATAGACATGAAGAAGAAGAAGACAAATGTCATGCTCGTCGGAGAAGGTATCGGG AAAACTATCGTTACAGGAAATCGCAACTTCATGCAGGGATGGACCACTTTCAGAACCGCCACAGTTGCGGTTTCAGGGAAAGGATTCATAGCCAGGGACA TGACATTCCGGAACACGGCAGGCCCCGAGAACCATCAAGCAGTCGCCCTTCGAGTTGACTCGGACCAATCAGCATTCTACCGGTGCAGCATGGAAGGCTA CCAAGACACAGTCTACGCCCACTCGCTCCGACAGTTCTACCGCGAGTGCGAAATCTACGGGACCATAGACTACATCTTCGGCAACGGTGCAGCCGTTTTC CAAAACTGCAAGGTCTACACGCGAGTCCCTTTACCGCAACAGAAGGTGACCATCACTGCTCAGGGGAGGAAGAACCCTCACCAGAGCACAGGGTTTTCGA TCCAAGACAGCTTCATCTACGCAACCCAGCCGTGCTATCTGGGTCGTCCGTGGAAGGAGTATTCGAGGACGGTGTACATGAACACTTACATGAGTGTCCT TGTCCAGCCTAGAGGGTGGCTTGAGTGGTACGGTAGCTTTGGGTTGGGGACATTGTGGTATGGCGAGTATAGGAACTACGGGCCCGGTGGGGCAGTGTCC GGTCGGGTTAAGTGGCCTGGATATCATGTTATTAAAGATGTAGGGACGGCGAAGTTGTTCACGGTGGGGAATTTCATCGACGGGAGGTCTTGGCTTCCGG CCACCGGAGTTAAGTTCACAGCTGGTCTAACCAATTGA
AA sequence Show only first row Show all	>Lus10020677 pacid=23140860 polypeptide=Lus10020677 locus=Lus10020677.g ID=Lus10020677.BGIv1.0 annot-version=v1.0 MAAFLVFLFIITLAPPNLQASPVATTTSIPIVEPTYVVHNFSAELWMQRACAGIRDPQTCVSSLRGRAPSQQRKSPASIVNAAIRNTLKEARSAIDAITK FTALSFSYREQLAVEDCKELLDFSVTELAWSLAEMNRVRAGTGLPSSEGGNLKAWLSAALSNQDTCLEGFEGTDRHVEKFIRGSLKQVTQLIGNVLSLYT ELHGLPFRSPVSPHSSAEFPDWMTESDRKAVKGNPVDLRIDAVVALDGRGHFRSIADAVDRVPPHSNSRYVIFIKKGIYHENIDMKKKKTNVMLVGEGIG KTIVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFYRCSMEGYQDTVYAHSLRQFYRECEIYGTIDYIFGNGAAVF QNCKVYTRVPLPQQKVTITAQGRKNPHQSTGFSIQDSFIYATQPCYLGRPWKEYSRTVYMNTYMSVLVQPRGWLEWYGSFGLGTLWYGEYRNYGPGGAVS GRVKWPGYHVIKDVGTAKLFTVGNFIDGRSWLPATGVKFTAGLTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	0	1
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	1.0	0.9852
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	1.4	0.9753
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	2.4	0.9676
AT5G67550			unknown protein		Lus10011544 [exp]	3.2	0.9608
AT1G14730			Cytochrome b561/ferric reducta...		Lus10031935 [exp]	3.5	0.9657
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	4.2	0.9592
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	6.5	0.9584
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	7.7	0.9410
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	8.5	0.9424
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	8.5	0.9401

Compare expression of checked genes

Lus10020677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.