Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02330 137 / 3e-37 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 127 / 1e-33 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 105 / 1e-25 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04970 70 / 2e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 69 / 3e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G20740 59 / 2e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G62820 54 / 1e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G14300 54 / 2e-08 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT2G47670 53 / 2e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G14310 52 / 2e-07 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029867 [exp] 493 / 3e-176 AT4G02330 352 / 3e-116 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 270 / 1e-87 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 270 / 1e-87 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013416 [exp] 118 / 2e-30 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 100 / 6e-24 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 91 / 8e-21 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 71 / 1e-13 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10028882 [exp] 64 / 2e-11 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031711 [exp] 60 / 8e-11 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022800 [exp] 174 / 1e-50 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 154 / 2e-43 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 143 / 2e-39 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 87 / 3e-19 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 82 / 2e-17 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.006G137800 [exp] 58 / 4e-10 AT5G20740 205 / 2e-67 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G162400 [exp] 53 / 5e-08 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 53 / 6e-08 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 50 / 6e-07 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.006G134600 [exp] 50 / 8e-07 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10020678 pacid=23140930 polypeptide=Lus10020678 locus=Lus10020678.g ID=Lus10020678.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGAAGCTATTACCTTTCTCTCCCATTCTCTTACTCTTCATGTTCATCACCACTTCATCTCCTGCTACCTTACCAACAATTCCTCCCTCGA CCAACAATGCAGCAGCCGCACCGGGGAACTTCTGCGCCACAACTCCATACCCTTCCTTCTGCAGATCGACTCTGCCTTACAACAAAACCAGCACAATCCA CGACTACACTAGAAAATCCGTGAAGCAATCTCTGTCTCAATCCAGACAGTTCCTCCGCTTGATTAAGTATCTCCTCCGAACAGCCACCAAGTCCAAACCT TTTCAGCAGCTCATCCCTTCACTTCTCGACTGCCGATTCCTAGCTCAGGTAAACGTGGACTCACTATCCAACACCATGAACACAATCAACTCCAAGGACA ATCTTCCCAGCTTCCAAGCTAGTGACTTGCAGACCTTACTGAGTGCCACTTTAACAAATCTCGACACGTGTTTGGATGGGATTCGAGCTGCGGATTCCAG CTCTACAGGGATCAACAACCTTGTAGCTCCTCTACTCAATGGCACCAAGTACTGCAGTGTTTCTCTTGCGCTTTTTGCTCACGGTTGGGTTCCCCCTCCG AGGAGGAAGAATAAGGTTGGGAGAGTGCTTAGTGAAAGGCCGATTGAAGGGCATGTTCTTGCTGAATACAATCTTGACCGTGGATTTCCATTGCAAATGT CGATCCAAGATCGTCGAGTTTTCGAGTCGTTTACAAGCAGAACCTGA
AA sequence Show only first row Show all	>Lus10020678 pacid=23140930 polypeptide=Lus10020678 locus=Lus10020678.g ID=Lus10020678.BGIv1.0 annot-version=v1.0 MAASKLLPFSPILLLFMFITTSSPATLPTIPPSTNNAAAAPGNFCATTPYPSFCRSTLPYNKTSTIHDYTRKSVKQSLSQSRQFLRLIKYLLRTATKSKP FQQLIPSLLDCRFLAQVNVDSLSNTMNTINSKDNLPSFQASDLQTLLSATLTNLDTCLDGIRAADSSSTGINNLVAPLLNGTKYCSVSLALFAHGWVPPP RRKNKVGRVLSERPIEGHVLAEYNLDRGFPLQMSIQDRRVFESFTSRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	0	1
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	1.0	0.9759
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10029867 [exp]	1.4	0.9224
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	5.5	0.9069
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031225 [exp]	11.2	0.8452
AT1G70780			unknown protein		Lus10019143 [exp]	11.8	0.9095
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	14.9	0.9221
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	20.1	0.9078
AT3G57980			DNA-binding bromodomain-contai...		Lus10031219 [exp]	20.2	0.8795
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	22.2	0.8858
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10027573 [exp]	25.5	0.8277

Compare expression of checked genes

Lus10020678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.