Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 122 / 1e-28 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 121 / 3e-28 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 105 / 2e-23 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 103 / 5e-23 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT1G11370 99 / 9e-23 Pectin lyase-like superfamily protein (.1) AT4G15980 103 / 1e-22 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 101 / 2e-22 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 101 / 2e-22 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 100 / 8e-22 ATPMEPCRA methylesterase PCR A (.1) AT1G53830 99 / 3e-21 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000034 [exp] 188 / 4e-56 AT3G06830 129 / 3e-36 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 249 / 6e-51 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031469 [exp] 213 / 3e-50 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015211 [exp] 181 / 4e-48 AT3G05610 420 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 117 / 1e-26 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 114 / 1e-26 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037456 [exp] 100 / 3e-22 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10033399 [exp] 101 / 5e-22 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10015877 [exp] 100 / 5e-22 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013400 [exp] 124 / 2e-29 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 124 / 2e-29 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 108 / 2e-24 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 105 / 1e-23 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.006G134500 [exp] 104 / 3e-23 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.010G109400 [exp] 104 / 3e-23 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 104 / 5e-23 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 103 / 1e-22 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.006G134700 [exp] 102 / 2e-22 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 101 / 4e-22 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10020681 pacid=23140811 polypeptide=Lus10020681 locus=Lus10020681.g ID=Lus10020681.BGIv1.0 annot-version=v1.0 ATGAGTCCATTAGCTCGCCTATTGGTACCGTGCCTTTCGAATTTGAAGTTGTTCTATAGTGTCTCCCTCGCCCTGCTCAAGAATGGATGGGTTCGTGACT TGGAGGGACCGGTAGTAGAAAGATGGCTGGCTGAAAAGACGAATTCAGACCGATATGTGAAGGGGAGGATGGTGCTTGATGATGAGGAGATTCGAATGAG TAGGGTCATGGTGGTGAATCCTTATGGAACGGGGAATTTCAGCACGATTGGGGATGCGGTGAATGCAGCGCCCGATGAGACGAAGCAGAACGATGATGAC TATATGATACATCTTGAAAGTGGTGTGTATAATGAGAAAACGACAAAAATAAGTGTACATATACCGCGAAAATGGCCGACGAGGGAGGGAATAAGCGGGT CGCGATCATCGGAGTCTCGTCCATCCTTCTCGTCGCGATGGTCATCGCCGTCACCGTCGGCGTCAACAGCAACAACGGCGGCGGCGACAGAGGCGGAGAG GCCGGGTGCCGCCGCGCGCGGCTCCACCAACAACAACGGCGGCGGCGACAGCGGAGGAGAGGCGGGCTCCGGTACCGGCCATGGGGACCTAGCCGCGTCG AAGAAAGCCATCACGGCGATCTGCCAGCCGGCGGACTACCGCGCTTCCTGCGAGCAGAGCTTGGAGAAGTCGGCCGGGAACGTCACCGACCCTAAGGAGC TCGTCAAAGTTGCATTCACCATTGCTCAGAAGAGCATCGGCGAAGCCATGGTGAAGTCCGAAACGTTAAAGGAGCTCGACGGTGATCCTAGGACCCATGA GGCTCTCGTTACGTGTCGGGAGCTTATGAAGATGTCCATTACTGAGCTTGAGGATTGCCTCACCAAGGCTGGACGGTTTCATGGCCGATTTGACCACGTG GCTCAGCGCCGCGATGACGTATCAGGAAACTTGCTTGGACGGCTTCACCAACGTGAGCAGCGAGGCCGGCGACAAGATGAGAAAGTTCATGAACTCTTCC ATGGAGTTTACCACCAACGGTCTCGACATCGTCACCGGACTCAACTCCTTATTCTCCTCCTTCGACCCGGAGGCCCTCGGCCCCGGCCGCCGGCCCCCCA CCGCCGATGGGGGGCGCTCCTCACCGCCGAGGACGGGAGCGTCATCACCCTCCCCGTCCTCGGACATGGCAACAACCCTTACCCAACGTGGGTCCCGGAG AGATTCCGCCGCCTCCTCGAGGACTCCGACGACACCAGCAAGAACGACAACCACAAGGAGGATTCCGACGACGAGACCGAGAAGGAGAAGAAGAAAGACG GCGGTAGCAGTGACGATGAGGACAGCAAGAAGAAGGGCGACGACGACGGCCATAAAGAGGACTCCGACGACGAGACCGAGGAGGAGGAGAAGAAAGATGA CAAGGCGAAGGAGAAGAAGGACTTTACCAAGCCGGCGTCGGAGATTGCTGACGTCACGGTGGCGAAAGATGGGAGTGGGGATTACACATCGATTAATGAC GCGTTGGAGGTTTTGGAGAAGAAGAGGAAGAAGAAGGACGTTGGTAAAGTTGTTGTGATGTATATTAAGGAAGGGACTTATAAGGAGTATGTTGAGGTGA AGAAGAAGCTTGATAATTTGGTCATGATCGGAGATGGTGCCGATAAGACTATCATCACCGGTGATAAGAACTTCATCGACGGCGTTTCCACCTATCACAC TTGCACCGTCGCCGTGGCCGCCGACTACTTCTTTGCCAAGAACCTCAAGATCGAGAACACCGCCGGGGCAGACAAGCACCAGGCGGGGGCGCCACGGGCG TCGGGCCAGCTTTGCGCTCTCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATCCATACATGACCGTCTC GATGAGAAATTCCAGCGCAGCTCTGATCCACCCGGAAGCTTGTCTGCCGTGGGTGGGTACCGTCGGGACCAAGACCTGCTGGTACGGTGAGTTCGGAAAC TACGGCCCCGGCGCCGATCAGAGCAAGAGGGTGACGTGGCAGGGGATTAAGAAGATTACGCCGCAGCACGCCGTGGATTTCACTCCCGGGCGGTTCATCC GGTCCGACCCGTGGGTTAAGCCGACCGGGATACCGTACGTTTCGTATATGGTTAAACCGTCCAAGTCACGAAGGGTTGATACGGAGTTAATCGAGTAA
AA sequence Show only first row Show all	>Lus10020681 pacid=23140811 polypeptide=Lus10020681 locus=Lus10020681.g ID=Lus10020681.BGIv1.0 annot-version=v1.0 MSPLARLLVPCLSNLKLFYSVSLALLKNGWVRDLEGPVVERWLAEKTNSDRYVKGRMVLDDEEIRMSRVMVVNPYGTGNFSTIGDAVNAAPDETKQNDDD YMIHLESGVYNEKTTKISVHIPRKWPTREGISGSRSSESRPSFSSRWSSPSPSASTATTAAATEAERPGAAARGSTNNNGGGDSGGEAGSGTGHGDLAAS KKAITAICQPADYRASCEQSLEKSAGNVTDPKELVKVAFTIAQKSIGEAMVKSETLKELDGDPRTHEALVTCRELMKMSITELEDCLTKAGRFHGRFDHV AQRRDDVSGNLLGRLHQREQRGRRQDEKVHELFHGVYHQRSRHRHRTQLLILLLRPGGPRPRPPAPHRRWGALLTAEDGSVITLPVLGHGNNPYPTWVPE RFRRLLEDSDDTSKNDNHKEDSDDETEKEKKKDGGSSDDEDSKKKGDDDGHKEDSDDETEEEEKKDDKAKEKKDFTKPASEIADVTVAKDGSGDYTSIND ALEVLEKKRKKKDVGKVVVMYIKEGTYKEYVEVKKKLDNLVMIGDGADKTIITGDKNFIDGVSTYHTCTVAVAADYFFAKNLKIENTAGADKHQAGAPRA SGQLCALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPYMTVSMRNSSAALIHPEACLPWVGTVGTKTCWYGEFGN YGPGADQSKRVTWQGIKKITPQHAVDFTPGRFIRSDPWVKPTGIPYVSYMVKPSKSRRVDTELIE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004181 [exp]	1.4	0.8338
AT1G32730			unknown protein		Lus10000258 [exp]	1.7	0.8556
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	5.5	0.7992
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	7.3	0.7683
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	8.2	0.8152
					Lus10003370 [exp]	9.5	0.8049
					Lus10028788 [exp]	9.8	0.8244
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	12.7	0.7770
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10040101 [exp]	13.0	0.7237
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	17.0	0.7653

Compare expression of checked genes

Lus10020681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.