Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05710 328 / 8e-113 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT5G26980 326 / 4e-112 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT4G02195 272 / 6e-91 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G46860 51 / 2e-07 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT1G32270 47 / 6e-06 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT5G16830 46 / 1e-05 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029864 [exp] 402 / 7e-142 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 363 / 1e-126 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 192 / 6e-61 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10040094 [exp] 54 / 3e-08 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 54 / 3e-08 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 55 / 4e-08 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10000311 [exp] 51 / 8e-08 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10021263 [exp] 43 / 0.0002 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 42 / 0.0002 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020800 [exp] 356 / 6e-124 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 356 / 1e-123 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.002G200400 [exp] 292 / 8e-99 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.001G138500 [exp] 52 / 1e-07 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 50 / 4e-07 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 49 / 1e-06 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.016G068600 [exp] 41 / 0.0004 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.006G202200 [exp] 41 / 0.0006 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10020683 pacid=23140855 polypeptide=Lus10020683 locus=Lus10020683.g ID=Lus10020683.BGIv1.0 annot-version=v1.0 ATGGTCAGCAGTTCGCTACGAAAGCCTAATCGCTCTTACGCTCCTCTTAGTACTGAAGATCCTGGGAATTCCAGCTGCATTTCTTCTGATATTTGGCGAT CTAAGGGTGCATTGACAGTTGGTTTACCACCTGCTTGGGTCATCATATCTGAAGACATAGCAGCCAATGTGCAGCGTGGAAGGACAAAGATGGCCGAGTT AGCCAAGGCTCACGCCAAAGCTGTGATGCCTTCGTTTGCAGATGGTAAAGACGATCAACACGTGATTGAGACTTTAACCCACGAGATAACCGGCATTATA AAACGATCGGAGAAGAAACTGCGGAGGCTTTCTGCAGGTGGTCCTTCGGAAGATTCAAATGGAAAAATGTGCAGGTACTATGACTTAGCTGCAATCCCTT TTCTGGCCCTTTACCTCAGATATTGTTCTCTTGCTACAGAGCTTCAAGGCCTATCAATGGAGCTTCGCAAGAAGCAATCAACTTACTTGACGCGCCTTAG GCAGCAGAAAGAGGGTCAAGATGGGGTTGACTTGGAAATGAACCTTAATGGTAATAGAATCAGAATTGATGACGATGGTTTAGATGACATGGTCATGGAG CCGGTAAATGAACTCGCTCAGATCATGAAGGACTTGTCAGTACTCGTGATAGACCAGGGTACCATTGTCGATAGAATAGACTACAACGTTCAGAACGTCG CAACCGCAGTTGAGGAAGGACTTAAACAGCTGCAGAAGGCTGAGAGAACACAGAAGCAAGGTGGAATGGTAATGTGTACCACGGTGCTTGTGATCATGTG CTTCATCATGCTGTTTCTTTTGATCCTCAAGGAGATTCTGTTCTGA
AA sequence Show only first row Show all	>Lus10020683 pacid=23140855 polypeptide=Lus10020683 locus=Lus10020683.g ID=Lus10020683.BGIv1.0 annot-version=v1.0 MVSSSLRKPNRSYAPLSTEDPGNSSCISSDIWRSKGALTVGLPPAWVIISEDIAANVQRGRTKMAELAKAHAKAVMPSFADGKDDQHVIETLTHEITGII KRSEKKLRRLSAGGPSEDSNGKMCRYYDLAAIPFLALYLRYCSLATELQGLSMELRKKQSTYLTRLRQQKEGQDGVDLEMNLNGNRIRIDDDGLDDMVME PVNELAQIMKDLSVLVIDQGTIVDRIDYNVQNVATAVEEGLKQLQKAERTQKQGGMVMCTTVLVIMCFIMLFLLILKEILF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	0	1
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	5.9	0.7817
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10014009 [exp]	7.1	0.7763
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	18.7	0.7241
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	19.1	0.7795
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030867 [exp]	41.9	0.7620
					Lus10028962 [exp]	41.9	0.6750
					Lus10033829 [exp]	48.1	0.7290
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	52.7	0.7489
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	56.4	0.7320
					Lus10017572 [exp]	59.1	0.7451

Compare expression of checked genes

Lus10020683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.