Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25800 325 / 2e-103 Calmodulin-binding protein (.1.2) AT5G57580 324 / 2e-102 Calmodulin-binding protein (.1) AT5G26920 308 / 3e-97 CBP60G Cam-binding protein 60-like G (.1.2) AT2G18750 305 / 2e-95 Calmodulin-binding protein (.1.2.3) AT2G24300 300 / 1e-93 Calmodulin-binding protein (.1.2) AT4G31000 295 / 3e-92 Calmodulin-binding protein (.1.2) AT1G73805 256 / 2e-78 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G62570 251 / 3e-76 Calmodulin binding protein-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029861 [exp] 1031 / 0 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10029852 [exp] 396 / 5e-123 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10011248 [exp] 332 / 2e-105 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 332 / 2e-105 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 309 / 1e-96 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 305 / 2e-95 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10001436 [exp] 305 / 3e-95 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10036301 [exp] 302 / 3e-94 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 271 / 3e-83 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010700 [exp] 500 / 1e-171 AT4G25800 331 / 6e-106 Calmodulin-binding protein (.1.2) Potri.005G020200 [exp] 484 / 3e-165 AT5G57580 337 / 1e-107 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 324 / 2e-102 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 322 / 5e-102 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 318 / 5e-100 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 315 / 4e-99 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 312 / 4e-98 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 309 / 5e-97 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.012G077000 [exp] 291 / 1e-90 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.015G071800 [exp] 288 / 2e-89 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10020686 pacid=23140956 polypeptide=Lus10020686 locus=Lus10020686.g ID=Lus10020686.BGIv1.0 annot-version=v1.0 ATGGTCCCCAAACGGCGCTCTCACGACAGCACAACATCTTTCTGGGACGATGATGATGCCGATCAAACCCAACGAACCGGCCATTCCGATCAAGACCCTC CTCCGAAACGATTCAGAAACGCGGTTAGAGATGTCCTTGGGAAGCAGTCAATGTCCGATTTCGCTTCAAGCATGGAGCCGTTCCTTCGATCCGTGATTCG TGACGAGGTTGAAAAGACTGTCAGTCGAGTGTTCAGCCATCAACCATCCTTCGGATCCAGAGGATCGTTCGACGGATTGAGACCGAAAAGCGGGCTACTT CTCCACTTTGTGAACAAACTCCCCTCTACCATCTTCACTAATGGCAGGGTCGAGGCGGAGGACGGAAACCCACTGAGGATCGTCCTCCTCGACGCTGCCA CCAACACAATTGTGGCGTCCGGCCCGCTTTCGGCACTCAAAGTCGAGATCATCGTCTTGAATGGTGATTTCGGGTCGGACGATCGGGAGGATTGGGGTTC GAACGAGTTCAACACCAATGTTATCAAAGAGCGCGAAGGGAGGAGGCCGTTGGTGACAGGAGAGCTCAACATTGTGCTAAAAGACGGGGTTGGTCAGGTC ACTGACGTAGTCTTCACCGACAATTCCAGCTGGCAGCGTAGCCGGAGGTTCCGGTTGGGCGCTAAAGCCTTCCTGAAAAGGACCGCTGCCGGCGGTGAGG TTGTTAGGATTCGAGAGGCTAGGAGTGAGCCTTTCATCGTCAAGGATCACCGTGGCGAATTGTACAAAAAACACTACCCACCTAAGTTGGGAGATGAAGT GTGGAGATTGGAGAGGATCGCCAAAGAAGGAGCATTCCACAAGCGATTGTCTAACAAAGGGATCAAAACTGTGAAGGAGTTCCTCCAAGCTTATATGGTT GATCAAGCTGCTCTAAGAAATATTCTAGGAGGCGGGATCTCGAATAGAAAATGGGATTCGATCGTGGAGCATGCAAACACATGTATGCTAGACGAGACCA AGTTCTACGTCTACAACGACAATGCCCAGGGCATCAAACTTTTGTTCAACTCTGTGTACAAGCTCGTAGCCGCCATGTTTGATGGTAGCAAGAGCTATGA GTCTCTTGATAAACTAGCCCCTTCCCAAAAGGTTCTACTAGAGAACTCGAAGCGACTAGCGTACAAGAATAGGAAAGACTTGATCCCAATGGATTCACGC TCGGTGTTCAGCCCTTCAAGGCCGCCTCTCCCGCCGCCGATCGAAAGCGAATCACTACCGTTCCACCTCCCAACGACCAACAACAACAACCTCAACTTCC ACCAATTGGAATTTGACACCTCCGCAAGCTCATCATCCAACGTGTACGACAGCATCAGCATGGGAAGCCAGCTGGAACTCTCGGTTCCACACCACCACCA CCACCAATACAACAACAACGCGTCGCCCAATCATTACTTCACACATATCCACCCGTTACAAAAGCCGCCGACGGCGCCGGCAAGCTTCAAATTTGACGCC GGCGGACACTTCTCCATACCGTCATCGTCGTGGCCTGTCGTTTCAACGACGGAAGCATCATCCTCGGAAGAGGACGAGAACAACAACAACAGCGCGGTGA CTACTTATCTGGCAGCGTCGCCGGCGATATTCTTCCCGACTGCGGATGAGTTAAGGGCGGTGCTGTCGACGTTCCCGAGTTTCGGCGTGGATAGAAATGA GATGCAAGTGGGTCCCGGGAGCCCAAGGGGTAATTGGTGTAAGCTCCGGGCGGCGTTGAAGTGGAGGTCCATGCTCGTCGCCAGGAGGACGTCGTGGCCG CGTCGCCAGCAATATTCCGGCTATTTCGTGTAA
AA sequence Show only first row Show all	>Lus10020686 pacid=23140956 polypeptide=Lus10020686 locus=Lus10020686.g ID=Lus10020686.BGIv1.0 annot-version=v1.0 MVPKRRSHDSTTSFWDDDDADQTQRTGHSDQDPPPKRFRNAVRDVLGKQSMSDFASSMEPFLRSVIRDEVEKTVSRVFSHQPSFGSRGSFDGLRPKSGLL LHFVNKLPSTIFTNGRVEAEDGNPLRIVLLDAATNTIVASGPLSALKVEIIVLNGDFGSDDREDWGSNEFNTNVIKEREGRRPLVTGELNIVLKDGVGQV TDVVFTDNSSWQRSRRFRLGAKAFLKRTAAGGEVVRIREARSEPFIVKDHRGELYKKHYPPKLGDEVWRLERIAKEGAFHKRLSNKGIKTVKEFLQAYMV DQAALRNILGGGISNRKWDSIVEHANTCMLDETKFYVYNDNAQGIKLLFNSVYKLVAAMFDGSKSYESLDKLAPSQKVLLENSKRLAYKNRKDLIPMDSR SVFSPSRPPLPPPIESESLPFHLPTTNNNNLNFHQLEFDTSASSSSNVYDSISMGSQLELSVPHHHHHQYNNNASPNHYFTHIHPLQKPPTAPASFKFDA GGHFSIPSSSWPVVSTTEASSSEEDENNNNSAVTTYLAASPAIFFPTADELRAVLSTFPSFGVDRNEMQVGPGSPRGNWCKLRAALKWRSMLVARRTSWP RRQQYSGYFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10004629 [exp]	3.5	0.8969
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	6.2	0.9270
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	6.7	0.9141
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	7.2	0.9197
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	9.8	0.9134
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	11.8	0.9123
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	12.1	0.9089
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	13.2	0.9106
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	15.9	0.9023
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	19.8	0.9077

Compare expression of checked genes

Lus10020686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.