Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 324 / 9e-102 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 322 / 6e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 322 / 6e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT1G16670 288 / 2e-94 Protein kinase superfamily protein (.1) AT1G56145 301 / 2e-93 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G09010 284 / 7e-93 Protein kinase superfamily protein (.1) AT1G70520 290 / 6e-92 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G21390 291 / 1e-90 B120 S-locus lectin protein kinase family protein (.1) AT1G53430 291 / 9e-90 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 289 / 1e-88 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010927 [exp] 650 / 0 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031401 [exp] 639 / 0 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 323 / 2e-101 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 300 / 4e-99 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10003711 [exp] 298 / 3e-98 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10026207 [exp] 297 / 1e-97 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10010960 [exp] 303 / 2e-97 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10001595 [exp] 293 / 4e-96 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10004825 [exp] 287 / 8e-94 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132900 [exp] 551 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G071300 [exp] 551 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G276600 [exp] 326 / 5e-106 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G067900 [exp] 332 / 2e-104 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.017G141400 [exp] 313 / 6e-101 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G109700 [exp] 303 / 7e-100 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G049600 [exp] 301 / 1e-99 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.017G141300 [exp] 311 / 2e-99 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G438400 [exp] 300 / 8e-99 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 299 / 2e-98 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10020688 pacid=23140921 polypeptide=Lus10020688 locus=Lus10020688.g ID=Lus10020688.BGIv1.0 annot-version=v1.0 ATGAGTTCCTCCGCACTCTTCTTCTTCGCCGGCGTTCTTGTTGTCCTCGCTATACTGCTCATACTTCTCACCGTCTTCTGGAAGTTGATCAAGTTGAATG ACACGGCCGCCAAATTGGCCAAAAAGGACTGCGAACTCCCTCAAGGAGGAGGAGTGGCATCTGAGGTTATGAGTGGGACTCTTCAAACAATTCGATACTT TGATTACCAGGCGCTAAAGAAGGCGACCAAGAGCTTCCACACGGATAATCTCCTAGGGAGTGGGGGGTTTGGACCGGTGTATAAGGGGAAGTTGAGAGAT GGCCGATTGGTGGCGGTGAAAAGGCTAGCATTAGAGAAATCTCATCAAGGCGAGGCGGAGTTCCTGGCAGAGGTGAGGATGATCACAAGCATACAACACA GGAACCTTGTCCGCCTCATCGGTTGCTGTTCCGATGGTGACCAGCGCTTGCTTGTCTATGAGTACATGAAGAACAGAAGCTTGGATCTTATAGTTCATGG GAACAGTAACCAGTTCATGGATTGGAACACAAGGTTCCAGATAGTTCTCGGCGTTGCTCGTGGCTTGCAATATCTCCATGAAGATTCGCCTCTGAGAATT GTTCATAGGGACATTAAAGCAAGCAATGTTCTTCTTGATGAAAAGTTCCAGCCTCGGATCAGTGACTTTGGACTAGCCAGGTTCTTCCCTGACGACCAAA CTTATCTCAGCACCACATTCGCAGGAACTTTAGGATACACAGCTCCAGAATATGCAATTCGAGGCGAGTTGTCAGAGAAGGCAGACATCTACAGCTACGG AGTGCTTATTCTCGAGATCATTTGCTGCCGGAAGAATACAGATCTCAACTTATTTCCAGCAGAACAACAGTACCTTCCTGATTACGCATGGAAGCTATAC GAGAAAAACAAGGTGCATGAGCTGATAGATCCAAGGCTTCGACAACACGGGATCGTGGAACGAGACGTGGTGCACGTGATTCAAGTAGCGTTCGCATGCC TCCAGCCGCTGGCGAACATGAGGCCTCCGATGTCCGAGGTGGTGGCGATGCTGACGTGCAAAGTCGAGACAGGCGCGAGTCCTGTCATAAAGCCAGCTTT CTTGGAGAAGAGGAGAAGAGCAGAAGGTAGCTTCTCTTGGGATGTCATCTCTGAGGCCTTCCCTTCTCCGTTCCGGAGCCTTGAATCTCACGCTGCTGCT TCTCGATCATGA
AA sequence Show only first row Show all	>Lus10020688 pacid=23140921 polypeptide=Lus10020688 locus=Lus10020688.g ID=Lus10020688.BGIv1.0 annot-version=v1.0 MSSSALFFFAGVLVVLAILLILLTVFWKLIKLNDTAAKLAKKDCELPQGGGVASEVMSGTLQTIRYFDYQALKKATKSFHTDNLLGSGGFGPVYKGKLRD GRLVAVKRLALEKSHQGEAEFLAEVRMITSIQHRNLVRLIGCCSDGDQRLLVYEYMKNRSLDLIVHGNSNQFMDWNTRFQIVLGVARGLQYLHEDSPLRI VHRDIKASNVLLDEKFQPRISDFGLARFFPDDQTYLSTTFAGTLGYTAPEYAIRGELSEKADIYSYGVLILEIICCRKNTDLNLFPAEQQYLPDYAWKLY EKNKVHELIDPRLRQHGIVERDVVHVIQVAFACLQPLANMRPPMSEVVAMLTCKVETGASPVIKPAFLEKRRRAEGSFSWDVISEAFPSPFRSLESHAAA SRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	0	1
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	2.2	0.8433
AT4G33100			unknown protein		Lus10014752 [exp]	3.5	0.8509
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	11.2	0.8822
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	16.7	0.8588
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	17.0	0.8283
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	18.3	0.8541
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	19.2	0.8345
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	19.9	0.8409
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	20.2	0.8307
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	20.9	0.8172

Compare expression of checked genes

Lus10020688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.