Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26910 315 / 2e-94 unknown protein AT3G58650 223 / 1e-61 unknown protein AT3G05750 186 / 8e-49 unknown protein AT1G67040 57 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029857 [exp] 1422 / 0 AT3G58650 345 / 2e-105 unknown protein Lus10037725 [exp] 166 / 3e-42 AT5G26910 276 / 4e-80 unknown protein Lus10016854 [exp] 127 / 9e-31 AT3G58650 134 / 2e-33 unknown protein Lus10017607 [exp] 49 / 1e-05 AT1G67040 179 / 7e-47 unknown protein Lus10033565 [exp] 49 / 1e-05 AT1G67040 236 / 3e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019700 [exp] 583 / 0 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 561 / 0 AT5G26910 371 / 6e-115 unknown protein Potri.008G108600 [exp] 202 / 5e-54 AT3G58650 234 / 6e-65 unknown protein Potri.T171201 [exp] 202 / 8e-54 AT3G58650 235 / 3e-65 unknown protein Potri.010G140900 [exp] 200 / 4e-53 AT3G58650 235 / 4e-65 unknown protein Potri.017G116000 [exp] 62 / 1e-09 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 54 / 4e-07 AT1G67040 339 / 2e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020689 pacid=23140909 polypeptide=Lus10020689 locus=Lus10020689.g ID=Lus10020689.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGCGGAAGCGTTCTAAAGGAAAGTTCTTTAATATGTTTGATTGGAATGGAAAGTCTCGTAAGAAGCTCTTCCCTAACAATTCTGAACTAA ATGAAGGATCGAAAACATGGAAAGAAAATGTCGAACGAGGGTCGAATTCGAATTCGGAGCTCTATAAAATAGAGGTGGATGAACGAAGAGGAAATGTTAG TAGTGACTTCAGTTGTGCTTCATCCGTAACGAGTGAAGATGGTTACGGAACTAGACCTCCGAGTGTCGTCGCGAGGCTAATGGGTTTGGATTCGATGCCG ATGTCGAATGTTGTTATAGAGGCATCTTCGTCTCTAGAGTTGGATACTAGCTTAGGTAGAAATCGTCCTCCTAATTTGTGGAGTGAGTACAGCAACCCTA TGGACTTGCTCAATGTTTCCAGCAGGATGATGGAAAGGCAGCATCATTGGAGATCTAGGGAGTCGATGCAGCAAGGCCGACCAATTGAGAGATTCAAGAC TGAAACTTTACCCCCGAGATTGGCCAAGTCGATCCCATCTACCCACCATAAGCTCCTTTCTCCTATCAGGACTCCCGGGTTCACCTCGACAAGGAATGTT GCTTACATAGCGGAGGCAGCTGCTAAGATAATGGAGTCAAGTCCCAGGGCTGCAACAGCTACAGCTAGAGTGCCCTCGATCGGTTCGCCTTCAGTTCCCA TGAGGATAAGGGATTTGAAGCAGAAAATGGAAGCTGCACATAGTTTGTCGAGACCTTGTAGTTTGAATTTGAATGGTCAACGTAGAGTCAGTAGCAACAG TGGATCAGAAGGCGCATCTTCATCCAGGAGGCCTGTGATATCAGGAAAGGTTTCTCCTGAAAGTGTGAGGGAAAAGGGAAAATCAGTTCCGAAGCCAGTA CAATCCAACAGGACCATTGTTCAAAGACCAAACGGTTCGCAAACGAGAAGTAATAGCATGATCAAACAAAAGGAAAGAATCAAATCCAGCCAGCCAGGTG CGCAAAAGACCATGCATAAGAAGCCTGCTGAAATCAGGAACAATGTGCTTAGACAGAATCACCAGAAGCAGAATAATTTGTCTAAAAAGGATAGTTCTAG TTCAAGTTCAACCGTGAAGCACTCGGTTCCAAACCAACAACAACGCGGTAGAGCTGAAACCTCAAGTGGCTCTTCTGGTTCAAGCAGAAAGGCTGTGAGT AACTCAAATTTAAAGGCAGGAATACCATCCAGAAAGACTGTGTCTGGTTCTGTGAATTCCGAGAAGGAGAAAAGGAAGACTCCAAATCAGAAGAAACAAA TAGTAAAGGTTACTTCTGATAAGCGGTCATATAACAACAAAGACTTAAGATCTGTCAAATGCAGTATTACTTCTGATGAATGCTCGAACACTTCAACCAG CAATGGGAAGAACAATGGTATGGATGTCGTCTCGTTTACGTTCACTTCTCCTATGGCTAAGTCCCCAACATCTGGCCAGGCAATGAGAGTCACTAATGGC TTCTCTGTTGATATGGAAAATGGTACCCACTTCAGACATGCAATTTCGCTTCCTGGAATTGGCAGTGATGACTTGGGTGTTCTTTTGGAACAAAAGCTGA GAGAGTTGACAGATAAAGTAGAGTCATCCAGATGTAATGTGATCAGAGAGGATAACTGTGCTGAAGGGAATGTGTCTGACTGTATTTTAGAAAATGAAGA GTCTCATCAGGGAAATGGTGAATGCTTTTCTGGCGAGCTTTCACTCCAGAACTCGAACCACGAGCATCAGGAATCAGAAGAAACGGGAGACCATAGCTGT AGCAGCAGCTACAGTGAAAGAGGAAACGAACTCGGATCCAAACATCCTAGTACAACGTGGATTCCAAGTCAAAGTTGCTCAGATACTCAGGGCAGTAGTG ATCAATGGTCACCAAGTCAAGTCTCGAATTCGATCAGCGAGGTGTCTGCAAATATTACTGCAGATGAGGAATTTGAGACTGAGCTGTCCGATTCTGCCAC CTCTGCAGTGAACCGGTCACAAGCTATCGGATCATTCATCATGCCTAAGTATAGGGATTCGAGTAACTGGGAGCTAGATTATGTTAGGAGCATGCTAGAA TCTGCCGAAATGAGGCTGGAAGATCTTGCATTGGGGGGTTGTACAATCTCCAAGATCATATCCCCAACACTCTTTGAAGACGAGGAGAACAAGTTAGCTA GTAACAATGAAGAACACTCCAAGCTCGATAGGAAGGTTTTGTTCGATTGCATTGTTGAGTTCTTGGACAGAAAATGCAGACGAAACTCGGTGGAGACCTG CAAATCGTGGTCCGAACTGAGGGTATTGTTCGGGACGAAAGGCTGGTTAGCTAAGGAACTGCAGAAGCAGATCACAGGGTGGAAAGGCATGGGAGATTTG ATGGTGGATGAGCTTGTGGACATAGACATGAGCTGTAGTAGACATGGGAGATGGCTTGATTTCGATCTTGAAGCGTTTGAGGAAGGTGTGGAGATTGAGG AGGAGATTCTTGCTTCTTTGGTTGATGATCTAGTTTCTGAGTTCTTGGTTCTGTAA
AA sequence Show only first row Show all	>Lus10020689 pacid=23140909 polypeptide=Lus10020689 locus=Lus10020689.g ID=Lus10020689.BGIv1.0 annot-version=v1.0 MEGERKRSKGKFFNMFDWNGKSRKKLFPNNSELNEGSKTWKENVERGSNSNSELYKIEVDERRGNVSSDFSCASSVTSEDGYGTRPPSVVARLMGLDSMP MSNVVIEASSSLELDTSLGRNRPPNLWSEYSNPMDLLNVSSRMMERQHHWRSRESMQQGRPIERFKTETLPPRLAKSIPSTHHKLLSPIRTPGFTSTRNV AYIAEAAAKIMESSPRAATATARVPSIGSPSVPMRIRDLKQKMEAAHSLSRPCSLNLNGQRRVSSNSGSEGASSSRRPVISGKVSPESVREKGKSVPKPV QSNRTIVQRPNGSQTRSNSMIKQKERIKSSQPGAQKTMHKKPAEIRNNVLRQNHQKQNNLSKKDSSSSSSTVKHSVPNQQQRGRAETSSGSSGSSRKAVS NSNLKAGIPSRKTVSGSVNSEKEKRKTPNQKKQIVKVTSDKRSYNNKDLRSVKCSITSDECSNTSTSNGKNNGMDVVSFTFTSPMAKSPTSGQAMRVTNG FSVDMENGTHFRHAISLPGIGSDDLGVLLEQKLRELTDKVESSRCNVIREDNCAEGNVSDCILENEESHQGNGECFSGELSLQNSNHEHQESEETGDHSC SSSYSERGNELGSKHPSTTWIPSQSCSDTQGSSDQWSPSQVSNSISEVSANITADEEFETELSDSATSAVNRSQAIGSFIMPKYRDSSNWELDYVRSMLE SAEMRLEDLALGGCTISKIISPTLFEDEENKLASNNEEHSKLDRKVLFDCIVEFLDRKCRRNSVETCKSWSELRVLFGTKGWLAKELQKQITGWKGMGDL MVDELVDIDMSCSRHGRWLDFDLEAFEEGVEIEEEILASLVDDLVSEFLVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26910			unknown protein		Lus10020689 [exp]	0	1
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	2.0	0.8798
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	2.0	0.8807
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10036176 [exp]	6.5	0.7924
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	8.5	0.8645
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001605 [exp]	9.5	0.8321
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	15.0	0.8642
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	15.4	0.8194
AT1G74680			Exostosin family protein (.1)		Lus10024214 [exp]	18.0	0.7521
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	18.0	0.7827
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10023253 [exp]	19.1	0.7608

Compare expression of checked genes

Lus10020689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.