Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47470 472 / 1e-167 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 132 / 9e-35 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 128 / 3e-33 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT5G60640 99 / 1e-22 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G21750 91 / 7e-20 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 90 / 2e-19 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT3G54960 84 / 2e-17 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G07960 70 / 3e-14 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT1G35620 72 / 1e-13 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G52260 71 / 3e-13 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029854 [exp] 531 / 0 AT2G47470 375 / 5e-130 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 495 / 1e-176 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 492 / 1e-175 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 135 / 2e-35 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 128 / 4e-33 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 120 / 3e-30 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10042721 [exp] 96 / 4e-21 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 95 / 4e-21 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10029681 [exp] 92 / 3e-20 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198300 [exp] 509 / 0 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 504 / 1e-180 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 133 / 4e-35 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.009G013600 [exp] 96 / 2e-21 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G082100 [exp] 92 / 5e-20 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 86 / 3e-18 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 80 / 2e-16 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 79 / 9e-16 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.008G040100 [exp] 74 / 2e-14 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.009G004500 [exp] 68 / 9e-14 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07749 [flax] [poplar] ERp29 Endoplasmic reticulum protein ERp29, C-terminal domain CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10020691 pacid=23140927 polypeptide=Lus10020691 locus=Lus10020691.g ID=Lus10020691.BGIv1.0 annot-version=v1.0 ATGTTGAGCTCCAAAATGCTTCTTCTTCCACTTCTTGCTTCTGCAGCCGTCGCTTTCTTCCTCCTCGTCAGCATTGTCGCAGCAGACGGCATCGTTGATC TTGGCAAGGACAATTTCGACAAAGAGGTCGGCAAAGATCGAGGCGTCCTCGTCGACTTCTACGCTCCTTGGTGCGGATTCTGTAAAAAGCTCATCCCAGA GTATGAGAAGCTTGGTGCTAGCTTCAAAAGATCCAAATCGGTTCTGATTGGAAAGGTGGACTGTGATGAACATAAGAGCCTCTGCACAAAATTTGGAGTG TCTGGTTACCCTGCTCTTAAATGGTTCCCTAAAGGCTCTTTAGACCCTAAAAAGTATGATGGTGAACGCACTGCCGAAGCCCTTGCTGCATTTGTGAATA GTGAAGCAGGTACAAATGTGAAGATAGCTGCAGTTCAATCCAACGTTGTGGTGCTAACACAAGAGACATTCGATCAAGTCGTTCTCGATGATACAAAAGA TGTCATGGTTGAGTTCTACGCACCATGGTGTGGCCACTGTAAAGATCTTGCTCCTATGTATGAAGAGGTTGCCACAGCGTTTAAGCTGGAGGAAGATGTT GTGATTGCTAACATTGATGCCGAGAAGTACACAGACTTGGCCGAAAGGTATGGAGTAACTGGTTTCCCCACTTTGAAATTCTTCCCCAAGAGCAACAAAG CCGGTGAAGCTTATGGTGGCAGAAGAGATGTAGACGACTTCGTAAGCTTCATCAACGACAAGTGTGGCACCAGCCGCGACATCGATGGAAAGCTTACTTC GAATGCAGGGATAGTCACATCTCTAGAAGACTTGGTTAAAGAGTTCGTAGCATATAGCGACGAGGAGGAGAAGAAGGAGGTTATTCAGCGAATGGAAGAA GAAGTTAAGAAGCTCAAGGGGAGCAATGCCAAGTATGGCGAGATGTACGTAAAAGCAGCGAGAGGCTGTCTGCAGAAAGGTTCTGATTACCCGAAGAACG AAATCCAGCGCCTGGATCGCATGCTTCAGAAGTCAATAAGTGAAGTAAAGGCAGACCAGTTCAGTATCAAGAAGAACATACTGTCAACCTTTGAGAGCTG A
AA sequence Show only first row Show all	>Lus10020691 pacid=23140927 polypeptide=Lus10020691 locus=Lus10020691.g ID=Lus10020691.BGIv1.0 annot-version=v1.0 MLSSKMLLLPLLASAAVAFFLLVSIVAADGIVDLGKDNFDKEVGKDRGVLVDFYAPWCGFCKKLIPEYEKLGASFKRSKSVLIGKVDCDEHKSLCTKFGV SGYPALKWFPKGSLDPKKYDGERTAEALAAFVNSEAGTNVKIAAVQSNVVVLTQETFDQVVLDDTKDVMVEFYAPWCGHCKDLAPMYEEVATAFKLEEDV VIANIDAEKYTDLAERYGVTGFPTLKFFPKSNKAGEAYGGRRDVDDFVSFINDKCGTSRDIDGKLTSNAGIVTSLEDLVKEFVAYSDEEEKKEVIQRMEE EVKKLKGSNAKYGEMYVKAARGCLQKGSDYPKNEIQRLDRMLQKSISEVKADQFSIKKNILSTFES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	0	1
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10024323 [exp]	3.5	0.8493
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	4.5	0.8233
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	4.9	0.8490
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10001803 [exp]	5.7	0.7965
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	6.5	0.8193
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	7.4	0.8014
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	8.5	0.8011
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	11.4	0.8376
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	14.5	0.8230
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	16.1	0.8271

Compare expression of checked genes

Lus10020691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.