Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56345 248 / 5e-83 Pseudouridine synthase family protein (.1) AT1G76050 52 / 8e-08 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029848 [exp] 357 / 2e-125 AT1G56345 358 / 7e-124 Pseudouridine synthase family protein (.1) Lus10005619 [exp] 47 / 6e-06 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10017250 [exp] 46 / 9e-06 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10040385 [exp] 44 / 3e-05 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009300 [exp] 279 / 1e-94 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 52 / 6e-08 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 46 / 5e-06 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10020693 pacid=23140937 polypeptide=Lus10020693 locus=Lus10020693.g ID=Lus10020693.BGIv1.0 annot-version=v1.0 ATGGTCATTACAAAGTCTCACAAAGTGGCTGCCAAGCTAGTCAAGGCGTTCACTGATCACAAGGTTAGAAAGACGTACATTGCTTTATGCATTGGTTCAT CTCCCGATTGGAATAGGATTAGGGTAAAATCGGGTCATGGTCGGTCCAAATTCGGGGCGTGGCGTGTGTATGCAGCTTCGGATGTCGGTCGGAGTCTCCC GGGAGGATCCTCCGTAAGGGAGATGGAGACTTCATTTGAGGTTGTGTCTGTGAATGGGAGTAAGAGAATGTTGAAAGAGGAGGAATGTGGGGAGACTGTG GTCGTCGAGGAGAAATCATTGAAACGTGGTGATGAAAAACAGGATGAGATATTGGTTAGAGCATTTCCTAGGAGTGGAAGGACTCATCAAATCCGTTTGC ATTGTCAGTATCTCGGGTTGTCCATAAGGGGTGATGTGAAATATGAAGGTGTTCATGAGTGGGAAGGGGAAGAGTGTTGTGGACATCAACTCCATGCTGA GAGTTTGTCTTTCGAACATCCTGTCACTGGTCTTTCCCTCAAGTTCAATGCCCCTTTGCCTTCTTGGGCGATCCAGCTATCGCCTGAATAA
AA sequence Show only first row Show all	>Lus10020693 pacid=23140937 polypeptide=Lus10020693 locus=Lus10020693.g ID=Lus10020693.BGIv1.0 annot-version=v1.0 MVITKSHKVAAKLVKAFTDHKVRKTYIALCIGSSPDWNRIRVKSGHGRSKFGAWRVYAASDVGRSLPGGSSVREMETSFEVVSVNGSKRMLKEEECGETV VVEEKSLKRGDEKQDEILVRAFPRSGRTHQIRLHCQYLGLSIRGDVKYEGVHEWEGEECCGHQLHAESLSFEHPVTGLSLKFNAPLPSWAIQLSPE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56345			Pseudouridine synthase family ...		Lus10020693 [exp]	0	1
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	7.3	0.8127
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	8.4	0.8196
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	9.8	0.7839
AT4G23930			Late embryogenesis abundant (L...		Lus10032397 [exp]	14.8	0.7636
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	15.2	0.7837
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	16.1	0.7799
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	17.7	0.7763
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	19.0	0.7522
					Lus10036558 [exp]	19.2	0.7470
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	23.7	0.7825

Compare expression of checked genes

Lus10020693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.