Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 145 / 4e-38 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 139 / 2e-35 unknown protein AT3G05770 92 / 7e-20 unknown protein AT1G54300 88 / 5e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029847 [exp] 322 / 4e-100 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 184 / 5e-52 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10010920 [exp] 163 / 3e-45 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10024257 [exp] 143 / 9e-41 ND / Lus10035819 [exp] 147 / 6e-38 AT4G30780 514 / 3e-177 unknown protein Lus10036602 [exp] 144 / 6e-37 AT4G30780 511 / 5e-176 unknown protein Lus10024097 [exp] 132 / 2e-33 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10041622 [exp] 132 / 2e-33 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10024256 [exp] 97 / 4e-23 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009000 [exp] 147 / 2e-38 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.006G180500 [exp] 145 / 9e-38 AT4G30780 503 / 2e-173 unknown protein Potri.001G041800 [exp] 138 / 3e-35 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 136 / 2e-34 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein Potri.003G185050 [exp] 134 / 6e-34 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 134 / 1e-33 AT4G30780 501 / 1e-172 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020694 pacid=23140946 polypeptide=Lus10020694 locus=Lus10020694.g ID=Lus10020694.BGIv1.0 annot-version=v1.0 ATGACGGGTCAGGAACATTTCAGTACTGACAATAACAACCTCCCATCCTGGACTGAAATTGTAGCATTGCAAATTATCCAGAACCAGAGTCAAAACCAGA AGCAGGGCCACCAGGACAGTCCCTTCTTTCAGAATGGGAATTCCAATTCCATTCCCATGGATCACTTACATCAGTACGCTCCTGCTAAGGGTTCCAATCA TCAGAATGTTGATTCCATTGCATTGCCTCCTCCTCAGAATGAGATGTATCACCAAGTTCAAGCAGAGGAGCCTCTCCGGGAAGCCCCGTTTGGGTTGAAT CTGGATAAATCCTCAGACTACGTAAGCTTGTTGGAGAAGAATCTGAATCATGAGCAACAACAAATTACTGGAACCAAAAGGAAGTCGAGGCTCGTCAGTT ATGCGGCCTCTGATCGAAAGTTGAAAAGTTTAACCATTCCTGCTCAGAAGTTGAGAGCTTTAACCATTCCAGCCACTACGCTCAGGATTGGTTCTTGGGA GATAGTTGCTACCGAGGCTACTGATCTTATGGCAAAGTGTTACTTCGATGGAAAGAAGCTGGCATGGCTAACCGTGGAAGATGGGTTCAAGAAGAAGATT GAAATCCGGTGGTCAAATATCATAGGCATAAATGCTTCCGATCCCGATGTTCTCAACGTCGAGTTGAATCAATGGTCGATTTTGTTTGAAGATACTAACC CTGAGGCAGAAAAGCAGACCTTGTGGAAGATAACAACAGATTTCACTGGAGGTCAAGTTTTGGAATGCAGGAGGCATCACACTATCTATCATCCAAAGCG CCTTGATAAGTCATACCAACTGCTTTTAAAATGCGATGAAAGGCTATATAGGCTCAACCGCAACCCATTTCCCAACCTTGAAATCAGTCCTTTTTTCTCA TCTTACACTCAACTTAGTAGTGTAGCGTTGTCCCGTCTTGGAAATCTGAACCTAGTTCCGGTTCCCAACCTTCCTCCGAAGCAAACAACATCTCATAACT CGATTCGTGTACCCAACCGTCCTCCTCATCCAACAACACCTCATAACCCACCAGTTCAGCTTCCTAACCTTCCTCAAGGGCAATGTGGTAATAATTACAA CGGGCTGTTTGGTCTAGCTGGCAAAGAAGAAGCTGAATATGACCTGAGCAGTATTGACTTGCGGGAAGGATTCGATGAGGTGTATGGTATTGAAATGAGT AGTAGTATTCAACCATTGAGGAACTTCGGCGATGGAGGATATATGAGCCAGGTGGTTTATGGATCTGTATCAAGAGGAGATCAGTTGTATAATAACCAGC AGCAACAACAAGGTTTTGTCCTGGATATTACTACTGGTATAGTTGGAAATGGAAACGGCCAACGAATGTATCAGCAGCAAGGTTTTATTCCAAATCATAC TACTGATATGGTTGGAAATGGAAACAGTGGAGAGATGTATCAGCGGCAAGGTTTTGTTCCGGATGCTACTACTGGTATGGTTGCGGATGAAAACAATGGA GAGATGTATCATTGA
AA sequence Show only first row Show all	>Lus10020694 pacid=23140946 polypeptide=Lus10020694 locus=Lus10020694.g ID=Lus10020694.BGIv1.0 annot-version=v1.0 MTGQEHFSTDNNNLPSWTEIVALQIIQNQSQNQKQGHQDSPFFQNGNSNSIPMDHLHQYAPAKGSNHQNVDSIALPPPQNEMYHQVQAEEPLREAPFGLN LDKSSDYVSLLEKNLNHEQQQITGTKRKSRLVSYAASDRKLKSLTIPAQKLRALTIPATTLRIGSWEIVATEATDLMAKCYFDGKKLAWLTVEDGFKKKI EIRWSNIIGINASDPDVLNVELNQWSILFEDTNPEAEKQTLWKITTDFTGGQVLECRRHHTIYHPKRLDKSYQLLLKCDERLYRLNRNPFPNLEISPFFS SYTQLSSVALSRLGNLNLVPVPNLPPKQTTSHNSIRVPNRPPHPTTPHNPPVQLPNLPQGQCGNNYNGLFGLAGKEEAEYDLSSIDLREGFDEVYGIEMS SSIQPLRNFGDGGYMSQVVYGSVSRGDQLYNNQQQQQGFVLDITTGIVGNGNGQRMYQQQGFIPNHTTDMVGNGNSGEMYQRQGFVPDATTGMVADENNG EMYH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10020694 [exp]	0	1

Compare expression of checked genes

Lus10020694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.