Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56423 238 / 1e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029844 [exp] 364 / 2e-128 AT1G56423 310 / 9e-107 unknown protein Lus10010918 [exp] 273 / 4e-93 AT1G56423 286 / 2e-98 unknown protein Lus10031415 [exp] 267 / 8e-91 AT1G56423 288 / 7e-99 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008700 [exp] 276 / 6e-94 AT1G56423 283 / 1e-96 unknown protein Potri.005G017400 [exp] 269 / 9e-91 AT1G56423 297 / 9e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020695 pacid=23140848 polypeptide=Lus10020695 locus=Lus10020695.g ID=Lus10020695.BGIv1.0 annot-version=v1.0 ATGATGGATTTCCAGAGCGGACGACTGCAACTTCTTGTTTTCATAATCGGGATCATCGGCCTCAGCCTCGTCGCTGAAAAATGCAGGCTACTCGTCGGAG AAGAATCATCATCACAGAGCGGGAAGTTCACGATCTTCGACTGCCTTGACATGAGCACCGGAACACTGGCCTGCACGGTGAAGGAAGGCGTAAAACTATA CGTTTACAACATCAGATCTTCACACGTGGAAGCAGCAAGGAATACGGCGATCGAGCAAGCAATACACGATGCGATGCAGCAAGGGGTATCAGCTAAAGAC GTAGCGAAGCAAGCACAAAAGGAAGGGGCAAAAGCAGCTAAGCTAGCTACTAAGAAAACCAAACGAATCGTGGGTCCTATCATCTCGTCGGGATGGGACT TCTTCGAAGCGGTGTACTATGGCGGCACCGTAACGGAAGGGTTCCTGAGGGGGACGGGGACCTTGTTTGGTACCTATGCCGGTGGTTTCTACGGGGAGCA AAGCATGGGGCGAGTTGGGTACCTAGTTGGGAGTCAGTTAGGGAGTTGGGTTGGTGGGAGGATTGGGTTGATGGTGTATGATGTGGTGAATGGTGTGTAT TACTTGCTTAGTTTTGCTGAGGCTGTAGAGAGTGAGATTGAGGAGTTTAAGGAAGCTGATGTTTCTGAGTCGTTTGTGGCTGCTGATGAGGAGTACAGCA GTGCTTATGAATCTCCTCCTGCGTATGAGAGTTCGGAATCAGAATTGGAATCAGAATCGGAATCGGAATCCTCCATGTCCTGGTAA
AA sequence Show only first row Show all	>Lus10020695 pacid=23140848 polypeptide=Lus10020695 locus=Lus10020695.g ID=Lus10020695.BGIv1.0 annot-version=v1.0 MMDFQSGRLQLLVFIIGIIGLSLVAEKCRLLVGEESSSQSGKFTIFDCLDMSTGTLACTVKEGVKLYVYNIRSSHVEAARNTAIEQAIHDAMQQGVSAKD VAKQAQKEGAKAAKLATKKTKRIVGPIISSGWDFFEAVYYGGTVTEGFLRGTGTLFGTYAGGFYGEQSMGRVGYLVGSQLGSWVGGRIGLMVYDVVNGVY YLLSFAEAVESEIEEFKEADVSESFVAADEEYSSAYESPPAYESSESELESESESESSMSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56423			unknown protein		Lus10020695 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	1.4	0.8904
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	2.2	0.8764
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	3.0	0.8782
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019327 [exp]	3.7	0.8703
AT1G76200			unknown protein		Lus10016001 [exp]	4.9	0.8613
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10005990 [exp]	7.0	0.8229
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10030448 [exp]	7.1	0.8408
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	8.2	0.8320
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	8.9	0.8634
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	9.3	0.8397

Compare expression of checked genes

Lus10020695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.