Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56430 344 / 2e-118 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) AT1G09240 333 / 3e-114 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) AT5G04950 322 / 7e-110 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) AT5G56080 322 / 9e-110 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1) AT4G26483 69 / 7e-15 nicotianamine synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029843 [exp] 600 / 0 AT1G56430 364 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10031416 [exp] 345 / 4e-119 AT1G56430 340 / 2e-117 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10010917 [exp] 338 / 1e-116 AT1G56430 334 / 5e-115 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014300 [exp] 387 / 2e-135 AT1G09240 405 / 8e-143 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.010G143100 [exp] 323 / 5e-111 AT1G09240 362 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.004G193400 [exp] 272 / 1e-90 AT5G04950 280 / 6e-94 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) Potri.010G143133 [exp] 73 / 1e-15 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03059 [flax] [poplar] NAS Nicotianamine synthase protein
Representative CDS sequence Show only first row Show all	>Lus10020696 pacid=23140798 polypeptide=Lus10020696 locus=Lus10020696.g ID=Lus10020696.BGIv1.0 annot-version=v1.0 ATGGGAGACCTCCTAGTGACCAAAGTCTTCAAACTCTATGACCAAATCTCAAGCCTCGAATCCCTCAAACCATCCAAAGATGTCGACACCCTCTTCACCG AGCTAGTCCACACGTGCATGCCACCGTGCCCCATCGACGTCAACAGCCTCCCAGACGAAATCCAACTCATGAGGTCGAAACTCATCACCCTCTGCGGAAC AGCAGAGGGACACCTCGAGTCACACTTCTCGACCCTCTTGGGGTCCAATTACCAAAACCCCCTCCACCACCTCCACGTATTCCCTTACTACCCCAACTAC CTCAAACTCAGCCTCCTCGAATTCACCCTCTTGAAACAACACTTCCAACCTGCAGTCCCCCTCCCTGCCCGGGTCGCCTTTGTCGGGTCGGGCCCACTCC CCTTGACCTCGATCATGTTGGCGACACATCACCTGACCGAATCCACTTTCCACAATTATGATGTGGATGCCTCGGCCAACAAGATGGCCAGCCGGCTGGT CTGGTCCGATCCGGACCTGTTCAGTCGGATGGTGTTTCGTACGGCCGACATCATGGATGTCGGCCGTGAGGAGCTGGAGGGGTTTGATGTTGTGTTCCTG GCCGCTCTGGTCGGGATGGATAAGAAGATGAAGGTGAGGGTGATTCGACATCTTGCCGATAATATGGCTCCCGGGGCGATTTTGATGGTGAGGAGTGCTC ATGGTGCTAGAGGGTTTTTGTATCCGGTTGTGGATCCTAGTGATCTTCAAGGGTTTGATGTCCTGTCTGTGTTTCATCCGACCGATGAGGTGATTAATTC TGTTGTCATTGCTCGTAAACAAGAAGAGGGTGGTGGTTCGATGCAGTTGATGATTGATCAACATCAGCAAAGTAGTTCATTCATGATTCCGAATTGCAAG TGTTCGGAGATTGCGGCTTATAAGCAGGCTCATCACCATGGATGCATGATGATGGAGGAGTTGACTGTTGAAGAGCAACTCTCCTGA
AA sequence Show only first row Show all	>Lus10020696 pacid=23140798 polypeptide=Lus10020696 locus=Lus10020696.g ID=Lus10020696.BGIv1.0 annot-version=v1.0 MGDLLVTKVFKLYDQISSLESLKPSKDVDTLFTELVHTCMPPCPIDVNSLPDEIQLMRSKLITLCGTAEGHLESHFSTLLGSNYQNPLHHLHVFPYYPNY LKLSLLEFTLLKQHFQPAVPLPARVAFVGSGPLPLTSIMLATHHLTESTFHNYDVDASANKMASRLVWSDPDLFSRMVFRTADIMDVGREELEGFDVVFL AALVGMDKKMKVRVIRHLADNMAPGAILMVRSAHGARGFLYPVVDPSDLQGFDVLSVFHPTDEVINSVVIARKQEEGGGSMQLMIDQHQQSSSFMIPNCK CSEIAAYKQAHHHGCMMMEELTVEEQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10020696 [exp]	0	1
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	2.4	0.8992
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	5.1	0.9064
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10029131 [exp]	5.8	0.9024
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	7.5	0.8571
AT5G44060			unknown protein		Lus10003619 [exp]	9.4	0.8674
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	10.8	0.8953
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	12.2	0.8789
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	13.9	0.8724
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	14.9	0.8788
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	18.0	0.8662

Compare expression of checked genes

Lus10020696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.