Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26850 1061 / 0 Uncharacterized protein (.1.2.3.4) AT2G41830 499 / 2e-160 Uncharacterized protein (.1) AT5G21080 486 / 3e-155 Uncharacterized protein (.1) AT1G05960 376 / 2e-114 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029842 [exp] 1877 / 0 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10026298 [exp] 536 / 7e-175 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10001161 [exp] 518 / 6e-168 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10019717 [exp] 498 / 1e-160 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10006583 [exp] 490 / 4e-157 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042372 [exp] 457 / 5e-143 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10016400 [exp] 229 / 7e-62 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008500 [exp] 1278 / 0 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4) Potri.016G055100 [exp] 551 / 3e-180 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.006G052100 [exp] 545 / 4e-178 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 536 / 1e-174 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020697 pacid=23140892 polypeptide=Lus10020697 locus=Lus10020697.g ID=Lus10020697.BGIv1.0 annot-version=v1.0 ATGGGTTTCATTTCTCGGAAGATTATCCCTTCTTGTGGCACGATGTGCGTGTGCTGCCCTGCAATGCGCTCCAGATCTCGCCAACCTGTTAAAAGATACA AGAAATTGCTTGCTGATGTTTTCCCCAAGTCTCCTGATGCTCCCCCAAATGACAGAAAGATCACAAAGTTATGTGAATATGCAGCCAAAAACCCAATTCG GATTCCCAAGATTGCCCAGTATCTTGAAGAAAGATGCTGCAAAGAACTGCGGAGCGGCCATACCAAGTTTATCAATGTTGCTGTGGAGGCTTACAATAAG TTGCTCTGCATTTGTAAGAACCAGATGGTATATTTCGCCACTAGCTTGTTGAATGTGGTCACAGAACTTCTAGACAAACCTAAACAAGAGGCTTTGGTGA TTCTTGGATGCCAGACTTTGACGAATTTCATCTATAGTCAGGTTGATGGAACTTATGCTCATAGCATCGAAAAATATGCCCCTAGAATATGTACACTGGC ACGCAAGAGTGAGGAGGAGTGTAATAGTAGCCGTTTGAGGGCATCAAGCCTGCAGTGCCTCTCAGCCATGGTATGGTTCATGTCAGAGTTCTCGTATATT TTCCCTGCATTGGATGAGCTGCAGATTGTGCATTCGACCTTGGATAACTACGGGCCTGAATCTCCTATTGAAAATGATGGCGAGAGAGGGGAAGCTCACA ATAACTGGCTGAATGAAGTTGTTAGAAGTGAGGGAAGAAGTACAGCTGTAGGAAATGACCCTAGCTCCATGGCCATTATCAGAGCACGGCCAGAAAAGAA AGATCCTTCTCTTTTGACTGGGGACGAAATTGAGCAACCAAGAGTGTGGGCACAAATTTGTATTCAAGGAATGGTAGATCTGGCAAAGGATAGTTCCACA ATGCGATGCGTATTAGATCCTATGTTTGTTCACTTTGACACTGGACATCACTGGGCTCCTCAACAAGGACTTGCTCTGATAGTTTTGTCTGCCATGTCAT ATTTTCTGGAGAATTCAGGACATCAACAGTCAGTGTTATCTGCTGTTATCCGCCATTTAGATCACAAAAATGTTGCACATGATCCACTGCTCAAGTCTTA TGTCATACAAGCTGCAACCGGTTTAGCTAGGCAAATTCGATCAGTTACAGTTCTGGCTGAAGTTGGATTTGTCAGTGACTTGTGTAGGCATTTGAGAAAA AGCCTTCAAGCCTCAGCTGAACCTTTAGGAGATCAAGAATTGAATTTGAACGTCTCGCTCCAGAACTCTATTGAAGATTGCTTACTTGAGATTGCCAAGG GGCTTGGTGATGCCCAACCTCTACTTGACCACATGTCAATGTCACTGGAGAAGCTACCATCCTGTGGAATTGTTGCTCGGGCAACCATTAGATCACTGAT GATTCTTGCGCATGTGATCTCGTCCTCGTCGGTTTCTTCAACCAAGCAGACTTTCCCAGAATCGCTTCTTGTTCAGCTTCTAAAAGCAATGCTCCATGCA AATGTTGAAGTGCGGGTTGAAGCACACCAGATTTTCACTGTTCTTCTCATTCCAAATGCTGGTAGTCTTGGACGGGAAGCTTCTGTTCGACCTAGTTACA TTTGTGAACCAAGAAGATGGCGTTCTGGTACACCATCTACATTTGCTTCGATTTCTGCACTACTAGAAAAGCTCCGGAAAGAGAAGGATGGCTCTGAAGT GGAAACGCGTGGAAATGGAGTTCATGATGACTGCACAGACAGAGACAATTCTGAAGAAGATTGGAAATATGGACGGGCTAGAAAGAACTCCCCAAACTTC TACAAAATTAGTTCAATTATTGAGAGAACTACGGGGACACCAAGCTTGGCTGAGGCTGCTGAACCATGTGCTTTGGAGCTAAATGAGGATCAGATTTCAC AGTTGCTTTCTGCCTTCTGGATGCAAGCCAGCCTTCCGGACAACACTCCTCCTAATCTGGAGGCGATTGCTCACTCCTTTACGCTAACACTTATTTCTTC ACAACTGAAGGAGACAAATGCAAACCTTGTGGTCCAATTCTTTCAGCTTGCTCTCTCTGTCAGACAATTGTCCTTCGACTCTCATAATGGGATGTTACAG CCAGCGTGCAGAAGGTCAGCTTTTGTTTTAGCAATGGGCATGTTAATGTTCACTGGCAAGACATATCAAGTTCCCGATTTGAACGACTTGCTCAAGCCGT TGGTCTCGGACAATGTTGATCCTTATTTGGGAATTAGTGATGATCTTCAAATATACGTTAAGCCCCAAGCAGATTTGAAAGAATTCGGATCTTTCACAGA TAATTCATTGGCTCTGTCAGTGCTAACTGAGTTGCAGAGGAAAATATCTGAATCTGATACAGCTGTAATGAACATCTTGGTTCTACACCTATCAACAACC ACCGAGATGGACCCGGATACAGTGGCCATTCAACTGTCGGAACCCTTTACACCTGATGACATGTTAATGTTTGGTTCACGATCAATGGGTGACCACAACC GGAAGCTTTCTTATTCAAAGGAATCACTTTCCTTTGACGAGGATCTTCCATCAAATGCATTGGCTGAGGATGATGCCACGAGCGATGCATCAGTCTCAGA CCTGTCACGCTTCATTCCCAAAATCCCTTCATCTCCTTCTGTCTCGCATGTTATTAGCATCGGGCAGCTACTAGAATCTGCTCTTGAGGTAGCTGGTCAA GTGGCGGGAACATCTGTTTCCATGTCACCCCTCTCCTACGACTCGATGACGAAACAGTGCGAAGCTCTCGGGACAGTGACAAGAAAGAAGCTCTCAAATT GGTTGGCTCATGAGAATCAGCAATCTAAGGGAGCAGCTGACAAGTACTTCTTGCCACCTGTCGTGGAAAGTGGAATTCCTGCTGTGGCACCATGGCAGAT GGAATTGGTGGAGGGAGAGATGATGAAGCAGGAGGGAATGGAGCAGTATTTGCCAATGAAGCTACCCCCTGCAAGTCCTTATGATAATTTCCTGAAAGCT GCTGGATGCTAA
AA sequence Show only first row Show all	>Lus10020697 pacid=23140892 polypeptide=Lus10020697 locus=Lus10020697.g ID=Lus10020697.BGIv1.0 annot-version=v1.0 MGFISRKIIPSCGTMCVCCPAMRSRSRQPVKRYKKLLADVFPKSPDAPPNDRKITKLCEYAAKNPIRIPKIAQYLEERCCKELRSGHTKFINVAVEAYNK LLCICKNQMVYFATSLLNVVTELLDKPKQEALVILGCQTLTNFIYSQVDGTYAHSIEKYAPRICTLARKSEEECNSSRLRASSLQCLSAMVWFMSEFSYI FPALDELQIVHSTLDNYGPESPIENDGERGEAHNNWLNEVVRSEGRSTAVGNDPSSMAIIRARPEKKDPSLLTGDEIEQPRVWAQICIQGMVDLAKDSST MRCVLDPMFVHFDTGHHWAPQQGLALIVLSAMSYFLENSGHQQSVLSAVIRHLDHKNVAHDPLLKSYVIQAATGLARQIRSVTVLAEVGFVSDLCRHLRK SLQASAEPLGDQELNLNVSLQNSIEDCLLEIAKGLGDAQPLLDHMSMSLEKLPSCGIVARATIRSLMILAHVISSSSVSSTKQTFPESLLVQLLKAMLHA NVEVRVEAHQIFTVLLIPNAGSLGREASVRPSYICEPRRWRSGTPSTFASISALLEKLRKEKDGSEVETRGNGVHDDCTDRDNSEEDWKYGRARKNSPNF YKISSIIERTTGTPSLAEAAEPCALELNEDQISQLLSAFWMQASLPDNTPPNLEAIAHSFTLTLISSQLKETNANLVVQFFQLALSVRQLSFDSHNGMLQ PACRRSAFVLAMGMLMFTGKTYQVPDLNDLLKPLVSDNVDPYLGISDDLQIYVKPQADLKEFGSFTDNSLALSVLTELQRKISESDTAVMNILVLHLSTT TEMDPDTVAIQLSEPFTPDDMLMFGSRSMGDHNRKLSYSKESLSFDEDLPSNALAEDDATSDASVSDLSRFIPKIPSSPSVSHVISIGQLLESALEVAGQ VAGTSVSMSPLSYDSMTKQCEALGTVTRKKLSNWLAHENQQSKGAADKYFLPPVVESGIPAVAPWQMELVEGEMMKQEGMEQYLPMKLPPASPYDNFLKA AGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	2.0	0.9575
AT2G46980			unknown protein		Lus10038019 [exp]	2.4	0.9520
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	3.2	0.9510
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	3.9	0.9366
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	4.0	0.9594
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	4.5	0.9512
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	4.6	0.9487
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10001517 [exp]	4.9	0.9388
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	5.3	0.9299
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	9.5	0.9348

Compare expression of checked genes

Lus10020697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.