Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26820 657 / 0 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) AT4G01950 140 / 4e-35 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 134 / 1e-32 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT5G06090 84 / 9e-17 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT5G03570 83 / 3e-16 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) AT2G38460 77 / 2e-14 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) AT2G38110 76 / 4e-14 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 72 / 9e-13 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 72 / 1e-12 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT1G06520 72 / 1e-12 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029841 [exp] 1270 / 0 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10031421 [exp] 868 / 0 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10010912 [exp] 837 / 0 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10029839 [exp] 266 / 5e-80 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10001449 [exp] 107 / 6e-24 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 104 / 4e-23 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10010934 [exp] 96 / 3e-20 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 93 / 3e-19 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 91 / 1e-18 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012900 [exp] 733 / 0 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Potri.002G192600 [exp] 147 / 7e-37 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.005G202200 [exp] 96 / 4e-20 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.016G113100 [exp] 81 / 2e-15 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.008G058200 [exp] 80 / 3e-15 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.006G198100 [exp] 79 / 5e-15 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 79 / 7e-15 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 79 / 8e-15 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G128600 [exp] 78 / 1e-14 AT5G03570 610 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.010G201200 [exp] 77 / 2e-14 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06963 [flax] [poplar] FPN1 Ferroportin1 (FPN1)
Representative CDS sequence Show only first row Show all	>Lus10020698 pacid=23140879 polypeptide=Lus10020698 locus=Lus10020698.g ID=Lus10020698.BGIv1.0 annot-version=v1.0 ATGCTGGTGTTCAACATGGAAGAAACCTTACTGAAGTCACCATCAGTGTTTCCTTACTTCATACCGGTGGCATTTGAAGCTGGAAATCCACTGAGGGCAT TATTTCTGTTGCTTCTCTACCCTTTGATCTGGTTAGTTGGGGAAGAGATGGGATTGAGTGTCATGGTCTTTGTGAGCTTTGTGGGGCTTAAATCAGAGAG CTTTAGGGTTGGAAGAAGCGTGCTGCCCAAGTTCTTTCTTGAAGATGTTGGTCTTGAAGGGTTCGAGAGGGTGATGAGATCGTACGGGAATGATAGAGTA GTTTGCGTTACAAGTTTCCCTAGGATCATGGTGGAAGGGTTTCTTAAGCATTACTTGGGGATTGGAGGTGTTATAGGCAGAGAGATGGTTGTGGTTCATG GCTACTTTACTGGTATGATGGAACAGAGGATCAAAGCTAATGATCAGCTGAGTTTCAGCAGTGAAATCAAGGTTGTTGAATATGATGTTGTTATGAACCT GCAGCAGCTGCTTGGCGTCGTTATTGAGGTTAAAGGAGCTGGAGCTGTTCTTGGTGTGGCTATGGTCCAATTCACTCTCTCAGCTCCCAGTTTCACCCTC TTCTCCTCACCCAAGGCGGCTCCGGCTGTTTCCCTGCGTGCTTCCCAAATCAGATATCTCATTTCTGCTGGAAGATGGTTGAATCGTGATTCTCGTTCCC TTGCTTATTGCAGGTTTAAAAATTTGAATTCAAAGTGCTCGAATGTCAACTCTGATGACCACTTCAGCCATGTTGTGGCTGATGATGAGTTTCCAGAAGA GGTCTCATCTATTCAAGGAGATTATCTGACCCCTATTGTGCAGCTTCATACTGAGATTTTCGAGACTTCAAGCATCGGTTTGTTAGTGGAAACTACCAAT GCAAATGATGAGTTTCCGGAGGAGGCCTCGTCTATTGAAGGAGATTATTTAACCCCCATTGTTCAGCTCAATACCGAAATATTCAACACTCCAAGCTTTG GTTTGTTGGTCGAAACATCTGATGCGGATGATGAGTTTCCGGAGAAGGTCTCGTCTATTCAAGGAGATTATTTGAAACCCATTGTTCAGCTCACTACTGA AAATTTTGAGACTCCAAGCTTTGGTTTGTTGGTGGAAACAACTGATGTGGATGGCCTGTTGTCGGCATTGCCTGTTTTATCCGAAGAAGAGCAGAATGCT CTGGCAGCCACCCCAGCCCATCCGGCTGGCTTACATGCATTCTACGCTAGTGTCATGGTTGGGAATGTTGTGGAACGGCTATGGGAGTTTACGTGGCCTT CTGCTATAGCATTGCTTTATCCAAGCCTTCTACCAGTGGCAGTCATGGGTTTCTTTGCTAAGTCGGCTTTACTTGTTGGGGGACCTTTGGTTGGAAAACT CATGGACTATTATCCCAGAGTACCGACATATATTAGTCTTAATATTGTCCAGGCCTTTGCCCAGCTGGTGTCTGCTGGGATGATAATTCACGGTCATACA GTGGCACAAACTTCCTTGTCTTCAGTTGTTCTCCGTCCATGGTTTTCTGTGCTAGTTTTAGCAGGGGCTATTGAGAAACTATGTGGAGTAGCATTGGGGA TTGCTAATGAGCGTGATTGGGTTGTGCAGTTAGCTGGGATAAGTAGGCCTATTGCACTTGCACAAGCAAATGCTGTTCTTACTCGGATTGATATGATTTC GGAGATAGCTGGAGCATCAATGTTTGGAGTTCTTCTTGCCAAGTTTGGTCCTGTTGCTTGCGTGAAATTTACTTCCACGTTGATGATTGCTTCATTGCCC CTGATGATTGGCCTCACATGTTTAACAAACAAGCTATCCAGTGGGGTTCTTGGTACTACTAGATCTTCCCAGTACGGTTGCAGAGACTCCATTGGTGAAG CTATGACTCCTGATCACCATCTAGTATATAGATGTCTGGAAACCATAAAACTCGGATGGAAGGAATATATTCAGCATCCAGTTCTCCCTGCAAGCATTGC CTATGTACTACTGTTCTTTAATATTGTGCTTGGTCCTACTAGTTTGATGACGGCGTTTTTGACTCAGCAAGGCGTAAATCCGTCAATTATAGGAGGTTTC AGTGGACTCTGTGCAGCCATGGGAATTGTGGCAACATTCCTTGCGGCAACTCTGGTCAAACAACTAGGGATTTTGAAGGCTGTAGCTTTTGGATTGATAT TCCAGGCTTCACTGCTAGTCATGGCCGTGACAGTGTATTGGAGTGGACCCATGTCTCATCAGAGTCCTATTATATTCTTCTTGGGCTTGATTGTAGTATC AAGGCTGGGACAAATGTCAACGGTAGTAGCAGGGGCACAAATTCTGCAGACAGGGATCCCATCATCAAAGGCAAACCTGATCGGGATAACAGAGGCATCA GTTGCGAGCTTAGCCGAGTCGTCAATGCTGGGGGTAGCAATAGTAGCAAACGAGGCATCCCATTACGGGATGCTAGCGATGCTGTCAGTTGCAGCGGTAG TTGGTTCAGCCTGGATTTTCTGCAGATGGGCTATGAATCCAACTCCAGAACAAAGACGGTTGTTTTCTTCTTCTAATCCCATTCCTATTGCCTAA
AA sequence Show only first row Show all	>Lus10020698 pacid=23140879 polypeptide=Lus10020698 locus=Lus10020698.g ID=Lus10020698.BGIv1.0 annot-version=v1.0 MLVFNMEETLLKSPSVFPYFIPVAFEAGNPLRALFLLLLYPLIWLVGEEMGLSVMVFVSFVGLKSESFRVGRSVLPKFFLEDVGLEGFERVMRSYGNDRV VCVTSFPRIMVEGFLKHYLGIGGVIGREMVVVHGYFTGMMEQRIKANDQLSFSSEIKVVEYDVVMNLQQLLGVVIEVKGAGAVLGVAMVQFTLSAPSFTL FSSPKAAPAVSLRASQIRYLISAGRWLNRDSRSLAYCRFKNLNSKCSNVNSDDHFSHVVADDEFPEEVSSIQGDYLTPIVQLHTEIFETSSIGLLVETTN ANDEFPEEASSIEGDYLTPIVQLNTEIFNTPSFGLLVETSDADDEFPEKVSSIQGDYLKPIVQLTTENFETPSFGLLVETTDVDGLLSALPVLSEEEQNA LAATPAHPAGLHAFYASVMVGNVVERLWEFTWPSAIALLYPSLLPVAVMGFFAKSALLVGGPLVGKLMDYYPRVPTYISLNIVQAFAQLVSAGMIIHGHT VAQTSLSSVVLRPWFSVLVLAGAIEKLCGVALGIANERDWVVQLAGISRPIALAQANAVLTRIDMISEIAGASMFGVLLAKFGPVACVKFTSTLMIASLP LMIGLTCLTNKLSSGVLGTTRSSQYGCRDSIGEAMTPDHHLVYRCLETIKLGWKEYIQHPVLPASIAYVLLFFNIVLGPTSLMTAFLTQQGVNPSIIGGF SGLCAAMGIVATFLAATLVKQLGILKAVAFGLIFQASLLVMAVTVYWSGPMSHQSPIIFFLGLIVVSRLGQMSTVVAGAQILQTGIPSSKANLIGITEAS VASLAESSMLGVAIVANEASHYGMLAMLSVAAVVGSAWIFCRWAMNPTPEQRRLFSSSNPIPIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	0	1
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	1.7	0.9522
AT5G46420			16S rRNA processing protein Ri...		Lus10004590 [exp]	2.2	0.9417
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	3.5	0.9498
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	4.9	0.9456
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	5.9	0.9381
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	6.5	0.9396
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	7.7	0.9425
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	10.9	0.9208
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	11.7	0.9371
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	12.6	0.9200

Compare expression of checked genes

Lus10020698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.