Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42610 256 / 6e-88 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT1G07090 211 / 7e-70 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT4G18610 209 / 3e-69 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G78815 209 / 4e-69 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT5G58500 199 / 3e-65 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT1G16910 192 / 8e-63 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1) AT3G23290 191 / 6e-62 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT2G31160 189 / 1e-60 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT3G04510 181 / 3e-58 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT5G28490 181 / 3e-58 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029838 [exp] 297 / 1e-103 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 237 / 8e-80 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029219 [exp] 234 / 8e-79 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10022023 [exp] 193 / 8e-63 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10042565 [exp] 191 / 7e-62 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 185 / 2e-59 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10024901 [exp] 185 / 3e-59 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 185 / 4e-59 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 184 / 1e-58 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142400 [exp] 247 / 2e-84 AT2G42610 259 / 1e-89 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.002G214200 [exp] 241 / 3e-82 AT2G42610 240 / 5e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.011G066400 [exp] 238 / 6e-81 AT2G42610 238 / 5e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.001G390900 [exp] 238 / 1e-80 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.004G057300 [exp] 237 / 3e-80 AT2G42610 241 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.011G109900 [exp] 236 / 4e-80 AT2G42610 238 / 3e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.009G076100 [exp] 213 / 3e-70 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 207 / 9e-68 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 196 / 3e-64 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.005G225600 [exp] 192 / 3e-62 AT2G31160 232 / 6e-78 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [flax] [poplar] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Lus10020700 pacid=23140840 polypeptide=Lus10020700 locus=Lus10020700.g ID=Lus10020700.BGIv1.0 annot-version=v1.0 ATGTCAACCAACGACAGAGGCAAAGAACTCATGGGCGAAGCAGGAGGATCCACTACACCTGATCCTCACCACAACTACCAACTCCATCATCACCAGCAGC AGCCGTCCCCGCCGACTCCGAGCCGGTACGAGTCACAGAAGAGGAGGGACTGGAACACGTTCGGGCAGTACTTGAAGAACCAGAGGCCACCGGTCCCGCT CTCCCACTCTAACTGCAGCCACGTCATCGACTTCCTCCGCTACCTCGACCAGTTCGGAAAGACTAAGGTCCACATCCAGGGCTGCATGTTCTACGGCCAG CCAGAGCCGCCTGCTCCCTGCACCTGCCCTCTTAGGCAGGCGTGGGGGAGCCTGGACGCTCTCATAGGCAGGTTGAGGGCTGCCTATGAGGAGAACGGTG GCTCCCCTGAAACGAACCCTTTCGCCAGTGGGGCGATCAGATTTTATCTCAGGGAGGTTAGAGATTGTCAGGCGAAGGCTCGAGGGATTCCTTACAAGAA GAAGAAGAAGAAGCCGTCGGGTTCTGGTGGGAGAGGATCGTCGTCGAGTCATGATCATGATGATCACTCTAGCTCTGCTCCTCCTATAATGCACTACTCT TGA
AA sequence Show only first row Show all	>Lus10020700 pacid=23140840 polypeptide=Lus10020700 locus=Lus10020700.g ID=Lus10020700.BGIv1.0 annot-version=v1.0 MSTNDRGKELMGEAGGSTTPDPHHNYQLHHHQQQPSPPTPSRYESQKRRDWNTFGQYLKNQRPPVPLSHSNCSHVIDFLRYLDQFGKTKVHIQGCMFYGQ PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRFYLREVRDCQAKARGIPYKKKKKKPSGSGGRGSSSSHDHDDHSSSAPPIMHYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10020700 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	3.2	0.8896
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	3.7	0.8859
AT3G09450			unknown protein		Lus10025334 [exp]	4.5	0.8753
AT3G03341			unknown protein		Lus10028523 [exp]	5.2	0.8349
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	7.3	0.8850
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	7.7	0.8495
AT2G28780			unknown protein		Lus10024409 [exp]	10.2	0.8679
AT5G05180			unknown protein		Lus10029012 [exp]	12.1	0.8487
					Lus10032385 [exp]	13.5	0.7959
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	14.5	0.8341

Compare expression of checked genes

Lus10020700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.