Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42600 1686 / 0 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT1G53310 1685 / 0 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT3G14940 1680 / 0 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G68750 515 / 1e-166 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT3G42628 74 / 2e-16 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029837 [exp] 1934 / 0 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10033610 [exp] 1853 / 0 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10017653 [exp] 1850 / 0 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10035050 [exp] 525 / 5e-170 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 522 / 3e-169 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10000065 [exp] 383 / 2e-127 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 307 / 1e-98 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214100 [exp] 1729 / 0 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Potri.001G391900 [exp] 1726 / 0 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.011G110700 [exp] 1716 / 0 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.010G131800 [exp] 514 / 6e-166 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.008G114200 [exp] 511 / 4e-165 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10020701 pacid=23140959 polypeptide=Lus10020701 locus=Lus10020701.g ID=Lus10020701.BGIv1.0 annot-version=v1.0 ATGGCGGCACCTTTGCCTAACCGGAACTTGGAGAAGGCGACCTCCATTGATGCGCAGTTGAGGCTGTTGGCTCCCAGGAAGGTCTCCGAGGACGATAAGT TGGTCGAGTATGATGCTCTTTTGCTTGATCGCTTCCTTGACATCCTGCACGATCTGCACGGCGAGGAAATCCGTGAAACGGTCCAGGAATGTTATGAGCT TTCAGCTGAGTATGAGAGGAAGCGCAATCCTGAGAAATTGGAGGAGCTTGGAAAAGTGATCACGAGTTTGGATCCTGGCGATTCGATTGTTATCTCGAAA TCATTTTCCAACATGCTTACCTTGGCCAACTTGGCTGAGGAGGTTCAGATCGCTTATAGGAGAAGGATCAAGTTGAAGAAGGGAGACTTTGCAGATGAGA ACTCGGCAACAACTGAATCTGACATTGAGGAGACGTTCAAGAAGCTGACATCTCAGCTGAAGAAGTCTCCTGAAGAAGTTTTTGATGCTTTGAAGAACCA GACTGTGGATTTGGTCTTCACTGCCCATCCTACTCAATCAGTTCGCAGATCCTTGCTTCAGAAGCATGGAAGGATCCGTGACTGCTTGACTCAGCTGTAT GCGAAGGACATTACTCCTGATGACAAGCAGGAGCTCGATGAGGCTTTGCAGAGAGAGATCCAAGCTGCTTTCCGGACTGATGAGATTAGGAGGACTCCTC CTACTCCCCCAGATGAGATGAGAGCAGGAATGAGCTACTTTCACGAGACAATCTGGAAAGGTGTTCCCAAGTTCTTGCGTCGTGTTGACACAGCCTTAAA GAATCTGGGGATAAATGAACGTGTTCCCTACAATGCCCCTCTCATTCAGTTCTCTTCATGGATGGGTGGTGATCGTGACGGAAATCCTCGTGTGACTCCT GAAGTTACCAGGGATGTGTGCTTACTGGCTAGAATGATGGCTGCTAACTTGTATTTCTCACAGATTGAGGATCTCATGTTTGAGTTGTCCATGTGGCGTT GCAATGAAGAGCTTCGCATTCGTGCTGAGGAACTTCACAGGAATTCAAGAAGAGATGCAAAACATTTCATAGAATTCTGGAAGCAGATCCCTGCTAATGA GCCCTACAGAGTGCTTCTCGGCTACGTGAGGGACAAGCTTTACAATACTCGTGAACGTTCTAGGCAACTATTGGCCAGTGGGATGTCTGACATTCCTGAA GAATCTACTTTTACCAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTCTGCTACAGATCCCTTTGTGCTTGTGGTGATCGCCCAATTGCCGATGGAAGCC TTCTTGATTTCTTACGCCAAGTCTCGACCTTTGGCCTTTCACTAGTAAGGCTAGACATTCGACAGGAATCGGACAGGCACACTGACGTTCTTGATGCCAT CACAAACCACTTGGGGATCGGATCTTATCGTGAATGGTCTGAGGACAAAAGACAAGAGTGGCTCCTTTCTGAACTCCGTGGAAAGCGTCCTCTTTTCGGT CCCGATCTTCCCAAAACCGAAGAGATTGCTGATGTATTGGACACACTACACGTCATCGCTGAACTTCCGGCCGACAACTTCGGTGCCTACATTATATCCA TGGCCACAGCTCCGTCCGATGTTCTTGCTGTCGAGCTTTTGCAGCGAGAATGCCACGTCAAACAACCACTGAGGGTTGTCCCATTGTTTGAGAAGCTTGC TGATCTTGAAGCCGCTCCTGCTGCTGTGGCCCGTCTCTTCTCGATCGACTGGTACAAGGACCGTATCAACGGTAAGCAAGAAGTTATGATTGGGTACTCC GACTCCGGCAAGGATGCTGGACGTTTCTCTGCTGCTTGGCAGCTGTACAAGGCTCAAGAAGAGCTTGTTAAGGTGTCGAAGCAATATGGCGTTAAACTCA CTATGTTCCATGGCCGAGGAGGCACAGTCGGAAGAGGAGGAGGTCCCACCCATCTTGCCATATTGTCTCAGCCACCGGAAACCATTAACGGCTCGCTTCG TGTCACAGTCCAGGGCGAGGTTATCGAGCAGTCCTTTGGAGAGGAACACTTGTGCTTCAGGACTCTCCAGCGTTTCACAGCTGCCACACTTGAGCACGGA ATGCATCCTCCGGTCTCCCCGAAACCTGAATGGCGTGCACTGATGGATCAAATGGCTGTTTTATCAACGGAAGAGTACCGCTCCATCGTCTTCCAGGAGC CTCGTTTCGTTGAATATTTCCGATTGGCAACACCAGAGATGGAGTATGGCCGTATGAACATTGGAAGCCGACCGTCCAAGAGGAAGCCAAGTGGAGGAAT CGAATCCCTTCGTGCAATTCCGTGGATTTTCGCATGGACTCAGACTAGGTTCCACTTACCTGTCTGGCTCGGGTTCGGAGCTGCTTTCAAGCATGTCATT GACAAGGATATCAAGAACCTCAAAATGCTCCAGGACATGTACAATCAGTGGCCGTTCTTCAGGGTCACAATCGACTTGGTCGAAATGGTTTTCGCCAAGG GTGACCCCGAAATCGCTGCTATGTACGACAAGCTCCTCGTCGTGCCGGAATTGCAACCATTTGGTGACCAGTTGAGATCCAAGTACCTCCAAACCAAGGA CTTCCTCCTCCAGATTGCTGGACACAAGGAGGTCCTGGAAGCAGATCCCTACCTGAAGCAGAGGCTCCGCCTGCGTGACGCATACATCACAACCCTTAAC GTCTCCCAGGCCTACACACTGAAGCGAATCCGCGATCCTGACTACCGCGTCACCCTGAGGCCCCACCTGTCGAAAGAATACAGCGACACAACAACCAAGC CAGCAGCCGAGCTCGTGAAGCTCAACCCGACAAGCGAGTATGCTCCTGGGCTGGAAGACACCATCATTTTGACGATGAAGGGTATCGCAGCCGGGCTTCA GAACACTGGTTAA
AA sequence Show only first row Show all	>Lus10020701 pacid=23140959 polypeptide=Lus10020701 locus=Lus10020701.g ID=Lus10020701.BGIv1.0 annot-version=v1.0 MAAPLPNRNLEKATSIDAQLRLLAPRKVSEDDKLVEYDALLLDRFLDILHDLHGEEIRETVQECYELSAEYERKRNPEKLEELGKVITSLDPGDSIVISK SFSNMLTLANLAEEVQIAYRRRIKLKKGDFADENSATTESDIEETFKKLTSQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRDCLTQLY AKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPPDEMRAGMSYFHETIWKGVPKFLRRVDTALKNLGINERVPYNAPLIQFSSWMGGDRDGNPRVTP EVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNEELRIRAEELHRNSRRDAKHFIEFWKQIPANEPYRVLLGYVRDKLYNTRERSRQLLASGMSDIPE ESTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITNHLGIGSYREWSEDKRQEWLLSELRGKRPLFG PDLPKTEEIADVLDTLHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYKDRINGKQEVMIGYS DSGKDAGRFSAAWQLYKAQEELVKVSKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHG MHPPVSPKPEWRALMDQMAVLSTEEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVI DKDIKNLKMLQDMYNQWPFFRVTIDLVEMVFAKGDPEIAAMYDKLLVVPELQPFGDQLRSKYLQTKDFLLQIAGHKEVLEADPYLKQRLRLRDAYITTLN VSQAYTLKRIRDPDYRVTLRPHLSKEYSDTTTKPAAELVKLNPTSEYAPGLEDTIILTMKGIAAGLQNTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10020701 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	4.7	0.9147
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10023328 [exp]	6.9	0.8721
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	16.0	0.8933
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	16.6	0.9010
AT5G49810		MMT	methionine S-methyltransferase...		Lus10042407 [exp]	16.9	0.8538
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	17.3	0.8913
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	22.0	0.8797
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	23.1	0.8778
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	23.7	0.8876
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	24.1	0.8804

Compare expression of checked genes

Lus10020701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.