Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31040 423 / 9e-149 ATP synthase protein I -related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029836 [exp] 592 / 0 AT2G31040 480 / 2e-171 ATP synthase protein I -related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142200 [exp] 432 / 8e-153 AT2G31040 463 / 1e-164 ATP synthase protein I -related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020702 pacid=23140858 polypeptide=Lus10020702 locus=Lus10020702.g ID=Lus10020702.BGIv1.0 annot-version=v1.0 ATGCCGATCCTCAATTACTTCTCCGTTACTTCATCGGCCACCCCTATATCCTCAGACTCCTCATCATCACCACAGTCCCCAAATCCCAACATCAACCAAA GGCTTCCAACCAAGATCATCCTCCCCAGCAAGAACCCCACCAAATGGTCCACCGGCGTAGCTCCAGGAGACTACGGCGGCCCCCCTGTCTCCACAAAGCT CCGCCGCTACTGGGGCGGCGAAGGCGAAGACCCTTTGACCTCCGATGACTTCATCTGGAACAAAGACTTCATGCCTCGCATGAAGCGCCTCTTTCAGGAC CCTGAAGATGCCGCTAAATCCGCCGCTCCTAAAGAGGATGAGTCATCTGGGTTCTTAAGCTTACACAGAGTAATGAGTTTGGACAGTATGGATATTGATC TGAGCAAAGAGCTAACAGCACCTTCGAAGCGCATTGTACAACAGCCAGCTGAGACCGTTACTAAGGTTGCTAAGAGCACGTCACCGAAATGGAAGTTTGC GCCCACGCAGCGCGAGCAGGACAAGTGGGAAAGAGCAACCAAGGCTGCAACTGGTGGTAGTGAAGCCATGTTTCGTGAGTTGAGGAAGCCGAATGGGGAT CCAGCAGTACTGGCTGCAGAGTCCAGGGAGCAGTACTACAAGTTGAAGAACAAGTTACAACTTCTCACTGTGGGCATTGGTACTGTTGGCTTGGTCTCAG CTTATGTCTCTTATTCCACAGAAATCACAGCTAGCTTTGGTGTTGGATTCATCGGATCGCTGGTTTACATGCGTATGTTGGGGAAGAGTATAGATTCCAT GGCTGATGGAGCAGGGGGGCTTCTCAAGGGAGCAATAGGACAACCCAGGTTGCTAGTTCCAGTTGCCTTGGTCATGGTCTTTAACCGGATTGTTGTCCCA GAATACGGATTCGTACACTTGGAATTGATACCGATGCTGGTAGGATTCTTCACGTATAAGATTGCTACTTTTGCTCAAGCAATCGAGGAAGCGCTTAAAG TACCCGCTGGAAACTCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10020702 pacid=23140858 polypeptide=Lus10020702 locus=Lus10020702.g ID=Lus10020702.BGIv1.0 annot-version=v1.0 MPILNYFSVTSSATPISSDSSSSPQSPNPNINQRLPTKIILPSKNPTKWSTGVAPGDYGGPPVSTKLRRYWGGEGEDPLTSDDFIWNKDFMPRMKRLFQD PEDAAKSAAPKEDESSGFLSLHRVMSLDSMDIDLSKELTAPSKRIVQQPAETVTKVAKSTSPKWKFAPTQREQDKWERATKAATGGSEAMFRELRKPNGD PAVLAAESREQYYKLKNKLQLLTVGIGTVGLVSAYVSYSTEITASFGVGFIGSLVYMRMLGKSIDSMADGAGGLLKGAIGQPRLLVPVALVMVFNRIVVP EYGFVHLELIPMLVGFFTYKIATFAQAIEEALKVPAGNSDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	0	1
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	3.2	0.8863
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	3.5	0.8923
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	6.3	0.8874
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	6.5	0.8909
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	6.6	0.9003
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	8.1	0.8803
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10010953 [exp]	8.5	0.8725
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	9.2	0.8781
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	12.0	0.8777
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	12.0	0.8477

Compare expression of checked genes

Lus10020702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.