Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020703 pacid=23140920 polypeptide=Lus10020703 locus=Lus10020703.g ID=Lus10020703.BGIv1.0 annot-version=v1.0 ATGGAAGGTGGAAGAGTAAGGATGATGATGATAGTGATGTTGGTAGTGATGGGGATGATGGTGGGTCAATCGAATGCAAGTTTTCAGCAATGTCTAGTGA GGTGTGTGAGAACTTGTTTCATTGATTTAACGTGTATTGGCAAGTGTGGAGCTAATTGTATCATTACCGACCCTCCCTCTATTCACAACCATATCAACTC CAAGCTATGTAGTCTTGGATGTCTATCTACTATTCTTATTGAAAATTCTCGAGATGTGGCGGAAGCGAAGGAAAGTGGAGCAGTTGTTGTGGAAGCTGTT GCGGAAAAATTGGCGGGACGATGCACCACAACTTGTAACCAGAATGATAATTAG
AA sequence Show only first row Show all	>Lus10020703 pacid=23140920 polypeptide=Lus10020703 locus=Lus10020703.g ID=Lus10020703.BGIv1.0 annot-version=v1.0 MEGGRVRMMMIVMLVVMGMMVGQSNASFQQCLVRCVRTCFIDLTCIGKCGANCIITDPPSIHNHINSKLCSLGCLSTILIENSRDVAEAKESGAVVVEAV AEKLAGRCTTTCNQNDN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020703 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	2.2	0.7633
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	3.9	0.7209
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	4.7	0.7460
					Lus10026438 [exp]	18.2	0.6820
AT2G26730			Leucine-rich repeat protein ki...		Lus10002360 [exp]	18.9	0.6218
					Lus10011908 [exp]	23.7	0.6285
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	26.4	0.6729
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001659 [exp]	30.6	0.6685
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	31.7	0.6720
					Lus10022394 [exp]	34.6	0.6356

Compare expression of checked genes

Lus10020703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.