Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42590 399 / 8e-142 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G26480 392 / 7e-139 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 391 / 1e-138 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 369 / 7e-130 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT1G78300 361 / 1e-126 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT4G09000 360 / 4e-126 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G35160 351 / 1e-122 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT3G02520 349 / 8e-122 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 348 / 9e-122 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G65430 342 / 3e-119 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029835 [exp] 496 / 2e-179 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 460 / 1e-165 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 458 / 3e-162 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 398 / 3e-141 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10036896 [exp] 385 / 3e-136 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10013908 [exp] 390 / 3e-135 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3) Lus10026660 [exp] 377 / 8e-133 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 375 / 3e-132 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10036471 [exp] 374 / 6e-132 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110900 [exp] 422 / 9e-151 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 416 / 2e-148 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.005G164500 [exp] 402 / 3e-143 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.002G097500 [exp] 401 / 1e-142 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.008G095000 [exp] 391 / 2e-138 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 382 / 7e-135 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.002G099800 [exp] 354 / 8e-124 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 353 / 1e-123 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.004G101700 [exp] 351 / 8e-123 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 348 / 2e-121 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10020705 pacid=23140839 polypeptide=Lus10020705 locus=Lus10020705.g ID=Lus10020705.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGAGACAAGTTCATCTACACTGCCAAGCTCGCCGAGCAGGCTGAGCGCTATGACGAGATGGTGGAAGCGATGAAGAATGTTGCCAAGTGTG GCGTGGAGTTGACTGTGGAAGAGAGGAACCTGCTGTCAGTCGGCTACAAGAATGTGATCGGGGCGAAGCGAGCTTCGTGGAGGATTCTGTCCTCGATTGA GCAGAAGGAAGAGAGTAGGGGAAATGAAGTGAATGCTAAGCGGATCAAAGAATACAGGCACAAGGTCGAAACTGAGCTGACTGATATTTGCAACGATGTA ATGGTTGTGATCGATGAGCATCTCATTCCTGCTGCTCCTACTGGAGAGTCGGCCATCTTCTACTATAAGATGAAGGGAGATTATTACCGGTATCTTGCTG AGTTTAAGAGTGGTAACGAGAAGAAGGAAGCTGGCGATAATTCAATGAAAGCATATGAGAAAGCTACTAGTTTGGCAGAGGCTGATTTGGCTCCTACGCA CCCAATTAGATTGGGCTTGGCACTGAATTTCTCAGTCTTCTATTATGAGATACTGAATTCACCTGAAAGGGCCTGCCACCTTGCGAAACAGGCTTTCGAT GAAGCTATCTCGGAACTCGACTCTTTGAACGAGGATTCATACAAGGACAGCACTTTGATTATGCAGCTTCTCAGGGACAACTTAACCTTGTGGACTTCTG ACATACCCGAGGATGGAGTGAGTGACATTGACGAGGCCCTGGCATGCTCGGGGAGGAATATGGCTTCCCGTGCTTTCTCTGTGGTGTTGATTTACTATAT AGTTTTCGCTGCTGTGGTTGAAATTCCTTGTGTGTCCCGAGTGTCATCGATACTGCTATATTGA
AA sequence Show only first row Show all	>Lus10020705 pacid=23140839 polypeptide=Lus10020705 locus=Lus10020705.g ID=Lus10020705.BGIv1.0 annot-version=v1.0 MAERDKFIYTAKLAEQAERYDEMVEAMKNVAKCGVELTVEERNLLSVGYKNVIGAKRASWRILSSIEQKEESRGNEVNAKRIKEYRHKVETELTDICNDV MVVIDEHLIPAAPTGESAIFYYKMKGDYYRYLAEFKSGNEKKEAGDNSMKAYEKATSLAEADLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD EAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDIPEDGVSDIDEALACSGRNMASRAFSVVLIYYIVFAAVVEIPCVSRVSSILLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	0	1
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	3.2	0.8257
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	3.9	0.8357
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	4.7	0.8141
AT1G36980			unknown protein		Lus10037355 [exp]	5.9	0.8489
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	6.9	0.8367
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	8.1	0.8231
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	10.5	0.7752
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	11.4	0.8134
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	13.4	0.7710
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	13.4	0.8144

Compare expression of checked genes

Lus10020705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.