Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42620 785 / 0 PPS, PP2, ORE9, MAX2 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) AT4G15475 59 / 8e-09 F-box/RNI-like superfamily protein (.1) AT5G27920 47 / 4e-05 F-box family protein (.1) AT5G23340 46 / 6e-05 RNI-like superfamily protein (.1) AT2G25490 45 / 0.0002 FBL6, EBF1 EIN3-binding F box protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029834 [exp] 1263 / 0 AT2G42620 843 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10040230 [exp] 132 / 2e-36 AT2G42620 84 / 4e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10002715 [exp] 129 / 5e-35 AT2G42620 85 / 2e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10012764 [exp] 64 / 3e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 51 / 2e-06 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 50 / 4e-06 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 47 / 5e-05 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10035161 [exp] 46 / 0.0001 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10026472 [exp] 45 / 0.0003 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142600 [exp] 892 / 0 AT2G42620 854 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Potri.011G066700 [exp] 769 / 0 AT2G42620 717 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Potri.001G323100 [exp] 50 / 4e-06 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.006G105400 [exp] 48 / 2e-05 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 47 / 4e-05 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 46 / 7e-05 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.017G061600 [exp] 46 / 7e-05 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.014G023500 [exp] 46 / 8e-05 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.006G220900 [exp] 44 / 0.0007 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.013G013100 [exp] 43 / 0.0007 AT5G27920 631 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020707 pacid=23140962 polypeptide=Lus10020707 locus=Lus10020707.g ID=Lus10020707.BGIv1.0 annot-version=v1.0 ATGACCGCCGCAGAATCTCCGGCGAAAACAATCAACGACCTCCCCGACGTCATCCTCTTCGAGATATGCGCCGCCGTCTACGACACCCGAGCCCGCAACT CCCTCTCCCTCGTCAACCACAAGTTCCACGCCCTCGAGCGCTCCACGCGCTACTCCCTCACGCTCCGGGGAAACGCGCGGGATCTCTTCCTCGTCCCTTC CTGCTTCCGATCGGTAACTCATCTTGACCTCTCTCTCCTCTCCCCCTGGGGCCACTCTCTACTCCTCTCATCTCCCTCATCTGAGCCTCACCTCCTGGCC TCTCTCATCGCCGGAAACTTCCCCGCCGTCACTTCTCTCACTGTATACTCCCGATCTCCCCAAACCCTGACCGTCCTCCTCCGCCACTGGCCGCGGCTGA GCCACGTCAAGTTGGTGCGCTGGCACCAGCGCCCTTCCTCCGGCGACGAAACCGACTTTGATCCTCTCTTCCAGCAATGTCGCGAGCTCCGGAGCTTGGA TCTCTCGAATTTCTATTACTGGACTGAGGATCTCCCTCCGGTTCTCCAGCGGCACCCGTTCGTGTCCAAATCCCTAACTCGGTTGAATCTCCTCACTGTT TCGCTCAGCGACGGGTTTAAGGCGGAGGAGATCGTCGCAATCACCGCGGCCTGCGGCAATCTGACGGAGTTTCTCGTCGCCTGTATGTTCGATCACAGTT ACATTGGATTCATCGGGGACGAAACTCTACAAGCGATCGCCTCCAACTGTCCGAAGCTATCCGTTCTGCATCTCGTCGATACGTCCTCGTTGCTTACTAC GAGAGCGATTCCCTCCGAAGACGGCTACACGGCGGAGGACGCGGGAGTAACCGTAGTAGGTCTGATTGATTTCTTCTCCAGACTTCCGCTTCTAGAGGAG CTAGTTCTGGACGTTTGTAAGAACATAAGGAACAGCTCCACAGCCTTAGAAACTCTGAATTCGAAATGCCCCAAGTTGAAAGTTCTAAAGTTAGGCTATT TCCATGGAGTCTGTTTGGCTGTTGAGTCTCGTCTGGATGGCTTAGCTTTGTGTTCAAAGCTTGAGTCCTTGTCGATTAAGAACTCAGCTGATTTGACCGA CATGGTACTGATAGAGATTGCCAGAGGATGCTACAGACTATCGAAATTCGAGATTGAAGGTTGCAATAACATTACAGTGCAAGGAATGCGAACATTCGCT TGTCTGCTTCACACGACTCTGGTCGAGGTGAAGATCTCTGCTTGCAAGAACCTCGACGCTGTTTCATCGCTGCGTGCTCTGGAGCCGGTCCAAGATCGAA TGGAGAGGCTACATATAGACTGTGTTTGGGATGGCTTGCAGGAATCAGGTATGGGGTTTGATCTGAATGAGGGGTTTGATCTGAACGAGGATTATTACGC AAGCAAGAAGAAGAAATGCAAGTATTCCGACTCTGACTCGTCGCTGTGTTCTTCGTCCTACTATTCCAGCAACGGGAATGGATACTGCACCAGGACATGG AAGAGGCTCAAGTGTCTATCTTTATGGATCGCGATCGGTGAGCTCTTAACTCCACTAACAAGTGCTGGTCTTGAGGATTGTCCTAACTTGGAAGAGATAA GGATAAAGATCGAAGGGGATTGCAGGGCTCGGCCGAAGCCTGCACAGCGAGCATTCGGGTTGAACATTCTCACTCAGTATCCGGAGCTGTGGAAGATGAA GCTGGACTGTAGCGACACGATCGGGTATGCACTGACCGCTCCATCCGGGTTGATGGATTTGAGCTTGTGGGAGAGGTATTTCTTGAACGATATTGGGAGT TTGAGCATTGTGGAGCTTGATTACTGGCCGCCGCAGGATCGAGATGTGAACCAGAGGAGCCTTTCGCTTCCCGCGGTTGGGTTGCTTGCGGAGTCGCTGA GCTTGAGGAAGCTGTTCATCCACGGGACTGCGCACGAGCATTTCATGAGGTTCTTGCTTAAGATTCCGAGCCTGAGGGACGTTCAGCTGAGGGAGGATTA TTATCCGGCGCCAGAGAATGATATGAGCACGGAGATGAGAGTGGATTCGTGCAGCCGGTTTGAGGATGCTCTGAATGGAAGAGAGATCCCTCATTGA
AA sequence Show only first row Show all	>Lus10020707 pacid=23140962 polypeptide=Lus10020707 locus=Lus10020707.g ID=Lus10020707.BGIv1.0 annot-version=v1.0 MTAAESPAKTINDLPDVILFEICAAVYDTRARNSLSLVNHKFHALERSTRYSLTLRGNARDLFLVPSCFRSVTHLDLSLLSPWGHSLLLSSPSSEPHLLA SLIAGNFPAVTSLTVYSRSPQTLTVLLRHWPRLSHVKLVRWHQRPSSGDETDFDPLFQQCRELRSLDLSNFYYWTEDLPPVLQRHPFVSKSLTRLNLLTV SLSDGFKAEEIVAITAACGNLTEFLVACMFDHSYIGFIGDETLQAIASNCPKLSVLHLVDTSSLLTTRAIPSEDGYTAEDAGVTVVGLIDFFSRLPLLEE LVLDVCKNIRNSSTALETLNSKCPKLKVLKLGYFHGVCLAVESRLDGLALCSKLESLSIKNSADLTDMVLIEIARGCYRLSKFEIEGCNNITVQGMRTFA CLLHTTLVEVKISACKNLDAVSSLRALEPVQDRMERLHIDCVWDGLQESGMGFDLNEGFDLNEDYYASKKKKCKYSDSDSSLCSSSYYSSNGNGYCTRTW KRLKCLSLWIAIGELLTPLTSAGLEDCPNLEEIRIKIEGDCRARPKPAQRAFGLNILTQYPELWKMKLDCSDTIGYALTAPSGLMDLSLWERYFLNDIGS LSIVELDYWPPQDRDVNQRSLSLPAVGLLAESLSLRKLFIHGTAHEHFMRFLLKIPSLRDVQLREDYYPAPENDMSTEMRVDSCSRFEDALNGREIPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	5.6	0.7097
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	6.6	0.7090
AT3G22430			unknown protein		Lus10021917 [exp]	8.7	0.6943
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	13.0	0.6474
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	15.0	0.6417
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10014795 [exp]	16.2	0.6096
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	16.7	0.6866
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	19.5	0.6810
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	25.4	0.6267
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10021776 [exp]	29.0	0.6392

Compare expression of checked genes

Lus10020707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.