Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58640 1021 / 0 Mitogen activated protein kinase kinase kinase-related (.1.2) AT2G31010 956 / 0 Protein kinase superfamily protein (.1.2) AT2G42640 664 / 0 Mitogen activated protein kinase kinase kinase-related (.1) AT1G73660 275 / 3e-79 protein tyrosine kinase family protein (.1) AT5G11850 271 / 9e-79 Protein kinase superfamily protein (.1) AT1G18160 268 / 3e-77 Protein kinase superfamily protein (.1) AT5G03730 266 / 3e-77 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G08720 260 / 1e-74 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT4G24480 251 / 4e-71 Protein kinase superfamily protein (.1) AT5G49470 239 / 2e-70 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029833 [exp] 1329 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10017649 [exp] 1137 / 0 AT3G58640 1040 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10033608 [exp] 621 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10023865 [exp] 274 / 7e-80 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 274 / 9e-80 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 266 / 3e-77 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 268 / 5e-77 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10000937 [exp] 259 / 1e-74 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 259 / 2e-74 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214400 [exp] 1134 / 0 AT3G58640 1197 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.014G142700 [exp] 1096 / 0 AT3G58640 1174 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.006G229400 [exp] 275 / 1e-79 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 272 / 2e-79 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.015G040100 [exp] 273 / 1e-78 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.018G053800 [exp] 271 / 2e-78 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 269 / 1e-77 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 267 / 7e-77 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G115800 [exp] 264 / 1e-76 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 263 / 2e-75 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10020708 pacid=23140861 polypeptide=Lus10020708 locus=Lus10020708.g ID=Lus10020708.BGIv1.0 annot-version=v1.0 ATGGAGCAAACACGAGATGATGCAGGGCCAGCAGAGCAGGTGCCATCTAATGCAGCATGGTGGGGTTCAGATTTCGTCGAGAAGTTTGACTCTGTTTCGT TGCATTCCCAAGAAGATGCTTTGAGTAACAAAGACTCGCCTAGAAATTTTGAAGGAGACGGTTTGTCTTCACAGACTGCTTCACAGGTTCTTTGGAGCAC GGGAATGCTATCTGAGCCAATACCTAATGGCTTTTACTCTGTCACACCTGATAAAAGACTCAGAGAGCATTTTGGGACCCTTCCGACTCTGGACGAACTT CATGCTCTTGGAAATGACGCTCCACGGGCTGATGCAATTGTTGTAGATTTTAAAAAAGATAAAAAGCTATCAATGTTGAAACAGTTGAATGTGGCTCTAG TGAGAGGATTGAGTGCGAATCCAGCTGCTATTATAAAGAAGATTGCTGGGTTGCTATGGTTAAGTGTGTCGGATTTTCACATTGGAACTTACGTGGGAAA ATTCTTAACAGGGACCTCTTTGTCACGGGAACACACCGAGGAGTTCAATTGCTTGGGCAAATCAAGCATGGCTCATGCCGCCCTCGGGCACTCATGCCGC CCTCGGGCCATATTGTTCAAAGTTCTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTGTGGTGGGTTTGCCAAATGATGGTTCTATCGATTGTGAAGACT CATATAAACACATGTCAGTTTTAGTCATCTTGAATTCGGTGGAACTACTGGTAGATCTTATGCGTTTTCCTGGTCAGCTGATACCCCGGTCTACCAGAGC AATTTACATGACTCATATATCACAAGCAGGGGAGAGTGATTCTGCTGAAAATGATTCGTGTGATTCACCACTTGAACCAAACAGTCCTCTTGTTGAAAGA GATGAGGGTCTTCAATTTCATAGGAAATTAGAAGGATCTTCAAATGTATCCAGTCTTGCATCGCGTAATTTGATGTTACGTTCTAGCTCATACATGGATA GAAAATTAAGTCCGGAGCATCCTTCGTTGCAGGTACATGGAAGGTCTGTGCTAAGCGGTGACAGACACTCAACTAAAGATTATTCTGAGGATGTAGCTTC CACAAGGTCAGAAGGAGCATCAACACCATCACAAACTCGTAGATTAAGAAGAAGAAGCATTAGCATGACCCCAGAGATTGGTGATGATATTGTGAGGGCT GTACGTGCAATGAATGAAACTCTGAAGCAAAACCGTCTAATGAGGGAGCGAGGAGATGCTACATCTTCTACAGTTAACTCTGATGAGAAGGACACCAACT CAGATCTCCTGAAACTTATGAACTACAAAAACTCTCAGAAGGCAATGTCATTACCAACGTCTCCTCATGAGTATACTAGCCAAACACTGGAGAGAGGTAG ACATTCAGGGTATTCCAGGAATGATGAACTGGTCACAACATGGAATAAAGTCCTTGAATCGCCCATGTTCCAGAACAAGCCGCTGTTGCCTTACGAAGAA TGGAACATTGATTTCTCCGAAATAAGTGTGGGAACTCGGGTTGGAATCGGTTTCTTCGGTGAAGTTTTCCGTGGTGTATGGAACGGGACTGACGTCGCTA TCAAAGTTTTCTTGGAGCAAGATCTGACCGCTGAAAACATGGAAGACTTCTGCAATGAAATAACCATTCTAAGTCGTCTTCGCCATCCTAACGTTATATT GTTTTTGGGTGCCTGTACAAAGCCTCCACGACTATCGATGCTCACGGAATACATGGAAATGGGATCCTTGTATTTCCTGATTCACTTGAGTGGTCAGAAG AAGAAGCTTATCTGGCGGAGGCGTCTTAAAATGCTGCGTGATATATGCAGGGGGTTGATGTGTATACACCGGATGAACATAGTACATCGAGATCTGAAGA GCGCAAATTGTCTCGTGAACAAGCATTGGACTGTTAAGATCTGCGATTTCGGGCTGTCGAGAATAATGGAGACCAGACCAGTAACAGACTTGTCGTCAGC AGGAACCCCTGAATGGATGGCTCCCGAACTCATCCGTAGCGAACCATTCACCGAGAAATGTGACATTTTCAGCCTTGGGGTGATCATGTGGGAGCTCTGC ACTCTAAGCCGACCGTGGGAAGGAATTCCGCCAGAAAGAGTTGTTTATGCTGTTGCGAACGAGGGATCTCGACTGGAAATCCCAGAAGGTCCTCTTGGCA GGCTAATCTCAGATTGCTGGGCGGAGCCACTTCAGCGTCCAAATTGTGAAGAAATCTTATCTCGTTTGGTTGATTGCGAGTACTCCCTTAGCTGA
AA sequence Show only first row Show all	>Lus10020708 pacid=23140861 polypeptide=Lus10020708 locus=Lus10020708.g ID=Lus10020708.BGIv1.0 annot-version=v1.0 MEQTRDDAGPAEQVPSNAAWWGSDFVEKFDSVSLHSQEDALSNKDSPRNFEGDGLSSQTASQVLWSTGMLSEPIPNGFYSVTPDKRLREHFGTLPTLDEL HALGNDAPRADAIVVDFKKDKKLSMLKQLNVALVRGLSANPAAIIKKIAGLLWLSVSDFHIGTYVGKFLTGTSLSREHTEEFNCLGKSSMAHAALGHSCR PRAILFKVLADTVGLESRLVVGLPNDGSIDCEDSYKHMSVLVILNSVELLVDLMRFPGQLIPRSTRAIYMTHISQAGESDSAENDSCDSPLEPNSPLVER DEGLQFHRKLEGSSNVSSLASRNLMLRSSSYMDRKLSPEHPSLQVHGRSVLSGDRHSTKDYSEDVASTRSEGASTPSQTRRLRRRSISMTPEIGDDIVRA VRAMNETLKQNRLMRERGDATSSTVNSDEKDTNSDLLKLMNYKNSQKAMSLPTSPHEYTSQTLERGRHSGYSRNDELVTTWNKVLESPMFQNKPLLPYEE WNIDFSEISVGTRVGIGFFGEVFRGVWNGTDVAIKVFLEQDLTAENMEDFCNEITILSRLRHPNVILFLGACTKPPRLSMLTEYMEMGSLYFLIHLSGQK KKLIWRRRLKMLRDICRGLMCIHRMNIVHRDLKSANCLVNKHWTVKICDFGLSRIMETRPVTDLSSAGTPEWMAPELIRSEPFTEKCDIFSLGVIMWELC TLSRPWEGIPPERVVYAVANEGSRLEIPEGPLGRLISDCWAEPLQRPNCEEILSRLVDCEYSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	1.7	0.9381
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	2.0	0.9304
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	3.5	0.9180
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	4.5	0.9063
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10001817 [exp]	4.6	0.8972
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	4.9	0.9043
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10016518 [exp]	5.7	0.8844
AT1G23790			Plant protein of unknown funct...		Lus10030619 [exp]	5.8	0.8670
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	6.9	0.8957
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	7.1	0.8903

Compare expression of checked genes

Lus10020708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.