Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30990 99 / 9e-22 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT1G29240 55 / 8e-08 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029830 [exp] 720 / 0 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10033602 [exp] 182 / 2e-50 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 159 / 6e-42 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029223 [exp] 48 / 2e-05 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10007276 [exp] 45 / 0.0001 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142800 [exp] 96 / 9e-21 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.011G067000 [exp] 50 / 3e-06 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.004G057800 [exp] 45 / 0.0001 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10020709 pacid=23140890 polypeptide=Lus10020709 locus=Lus10020709.g ID=Lus10020709.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAGCAATTGGATTTCAGTCAGCCAATATTGTCAGTGAGGAGAGCTTCATCATCACCAGTAGTTGTCAAAGATTACAACAGGAAACCTGCAA ATGTAGCTAAACATCCCCTCTGCAAACCTGATCAGCCTGAAGTGAAATTAGGCCAAGTCAGGGTTTCAGGAACAGTTCCTTTTATCTGGGAGAGAAGCCC TGGAACACCCAAGAATGAATCTTCTTCTGCAGAACCTAATTCACCTGCTGTTCCAAGACTCCCCCCTGGGAGAAGAAGACTGAATGCCAAATCCATTGCT TCAGAAGGATCGTTATCATCCCCAAAAGCGGAAGAGAAATCCACTGATGATGATGATTCTGAGGAGGAGGAGGTGAGATTTTTGGATGCACATGATACAC TTTCCAGGACCGAATCGAATGGACTTGATAATGCGAGACCGAATAGGACATTATCGAGTGATTTGCGGGCTAGAGACTTCGTGATGGGGAAATTCTTGCC TGCTGCAGAAGCTATGGCTTCTGAGACGACTCGATCTCAGCAGCATTCTCCACGGTATCCTACCAAGAAACAGCTTGTTCCTAAAGAGCAAGCTAGACAG TTCAAGACATTTTCGAATAAAGGTGACATCTTTGCGTACTATGGCAATAATCCGGTAGTGGTGGGTGATGATCACAGTGAACCTGATGATTCGTGTTCAC TTAGACTCTGTGGGTTACTGCCACTTTGTGGGAATGGGAAGCAACCGTCGAGATACGGAAACAAGCATTCGATGGATAGTTTTCGGATGAGGTGCTGCCC GGAGATGATTAATGTTGGTGGATCATCTGCAAACAAGGGATGGACACATAATAATAATGGATCAAAATCACCCCAAGTACCATTTGCTCGTAAAGGAGAA GGCTTTCTTGGAATTCCTGAAAGGTATAACAAGAATTTGCAGACAGTGGGTTCTATTCTGCGTGTTAAGGATGATGACGTCAGCAGTTTGGGTGAATTGT TATTATCATCATCAGAATCTTCAACTCCTGTTGTGGAGAAAATCCTGTACATGGATGATCCTGTACATGATCAGGACAAGAAAGTGTTGACAACAACAGA AGAAGATGATTCGTCTAAGCACGAAAAGTTTCAATCTTTTGGTGCTTGTTATCTGTCATTTTCAGACGACGATGAAGAAGCTCAAGTGGACATGAAGACT GATGAAATTCACCCTCTTTCGCTACCTTTACCGAAATCTCCATCGGAGTCCTGGCTGAAGAAAGCCTTGCCCACTGTTCCATCATCAAAGCCTCCCCTTG GTGTCGTAGAGTTTTCGAAATCCTCCCCGGATATTTGGAAAACGATTGTTAAAGCTTCCAATGGGAAGAACATGCACTTCGAGTTTTCTGAGGGGAAACT GAAACCGATTCCAGAAGCATAA
AA sequence Show only first row Show all	>Lus10020709 pacid=23140890 polypeptide=Lus10020709 locus=Lus10020709.g ID=Lus10020709.BGIv1.0 annot-version=v1.0 MEEKQLDFSQPILSVRRASSSPVVVKDYNRKPANVAKHPLCKPDQPEVKLGQVRVSGTVPFIWERSPGTPKNESSSAEPNSPAVPRLPPGRRRLNAKSIA SEGSLSSPKAEEKSTDDDDSEEEEVRFLDAHDTLSRTESNGLDNARPNRTLSSDLRARDFVMGKFLPAAEAMASETTRSQQHSPRYPTKKQLVPKEQARQ FKTFSNKGDIFAYYGNNPVVVGDDHSEPDDSCSLRLCGLLPLCGNGKQPSRYGNKHSMDSFRMRCCPEMINVGGSSANKGWTHNNNGSKSPQVPFARKGE GFLGIPERYNKNLQTVGSILRVKDDDVSSLGELLLSSSESSTPVVEKILYMDDPVHDQDKKVLTTTEEDDSSKHEKFQSFGACYLSFSDDDEEAQVDMKT DEIHPLSLPLPKSPSESWLKKALPTVPSSKPPLGVVEFSKSSPDIWKTIVKASNGKNMHFEFSEGKLKPIPEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30990			Protein of unknown function (D...		Lus10020709 [exp]	0	1
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	4.0	0.7570
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	7.3	0.7276
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	10.3	0.7389
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	10.8	0.6689
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	12.5	0.7093
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	14.1	0.6738
AT4G33480			unknown protein		Lus10003851 [exp]	18.0	0.7017
AT5G36930			Disease resistance protein (TI...		Lus10023329 [exp]	28.6	0.6623
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	31.5	0.6675
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	44.9	0.6718

Compare expression of checked genes

Lus10020709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.