Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37020 343 / 1e-118 Translin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029829 [exp] 528 / 0 AT2G37020 346 / 7e-120 Translin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126200 [exp] 367 / 7e-128 AT2G37020 378 / 3e-132 Translin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01997 [flax] [poplar] Translin Translin family
Representative CDS sequence Show only first row Show all	>Lus10020710 pacid=23140949 polypeptide=Lus10020710 locus=Lus10020710.g ID=Lus10020710.BGIv1.0 annot-version=v1.0 ATGTCATTTCGAAGCGCATGCTTCAGTCTCTGTTGCTCCTCCTTAAACCCTAGATCAACTCGCCTTCCCATTTTCCGCGCTCTCAGTCCAGCGATCACCG CGTCTCTGCGGCTTCCTCTTGCAGCTTCATTGTCTTCTCACCCTCGACTATCCCGCTCCTTCTGCTTCTCTCCCTCTATGGATCGACCTGGTGGCGCCGT AGATGAATCTCCCAACTCTCTTTCCTCCCTCGAGAACCAGTTCAAGGGCTTCCGCAGCCAACTGGAGGAATCCGGCTCCTTGCGCGACAGGATAAAGGCG GTAGCGACGGATATTGAGTCCACTACTCGGAGCATGCAAGCTAGTCTCCTCCGCGTCCATCAGTCTCGCCCTGTTCAAGAAATTTTGGATGAGACAAAGG TTCAAATTGGTACGCTGAGGGAGCTGTACAAGCAACTTGCTGGAGTTGTTCGGGAAGTTCCTGGACAGTATTACAGGTATAATGGTGATTGGAGGAGTGA AACTCAGAGTGTAGTTTCCCTGCTTGCTTTTATGCATTGGTTAGAGACTGGAGATCTCCTTATGCACTCGGAAGCTGAGAAAAAACTTGAGTTGAATGGT TCAGAATTCAGTTTGGACGTGGAAGACTACCTCGTAGGCATTTGCTTCATGTCAAATGAGATGCCTCGATATGTTATGAACCAAGTGACAGCGGGTAACT ATGATTGCCCTAGAAAGGTGTTGAAGTTCCTGACCGACCTCCATGCAGCTTTCCGAATGCTCAATCTCCGGAATGACTTTCTTCGCAAGAAGTTTGATGG GATGAAGTACGACTTGAGAAGAGTTGAAGAGGTGTACTATGATGTCAAGATCCGAGGTTTGTCCGCCAATGGCAATCCTACCGGAGAACAAGGAATCCAG GGCTCGGCATAG
AA sequence Show only first row Show all	>Lus10020710 pacid=23140949 polypeptide=Lus10020710 locus=Lus10020710.g ID=Lus10020710.BGIv1.0 annot-version=v1.0 MSFRSACFSLCCSSLNPRSTRLPIFRALSPAITASLRLPLAASLSSHPRLSRSFCFSPSMDRPGGAVDESPNSLSSLENQFKGFRSQLEESGSLRDRIKA VATDIESTTRSMQASLLRVHQSRPVQEILDETKVQIGTLRELYKQLAGVVREVPGQYYRYNGDWRSETQSVVSLLAFMHWLETGDLLMHSEAEKKLELNG SEFSLDVEDYLVGICFMSNEMPRYVMNQVTAGNYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYDVKIRGLSANGNPTGEQGIQ GSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	0	1
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	1.0	0.9374
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	2.4	0.9320
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	2.8	0.9318
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	3.7	0.9352
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10039888 [exp]	4.2	0.9196
AT4G34412			unknown protein		Lus10014052 [exp]	4.9	0.9057
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	5.3	0.9260
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	6.0	0.9274
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	8.9	0.9291
AT1G71350			eukaryotic translation initiat...		Lus10041458 [exp]	11.9	0.8686

Compare expression of checked genes

Lus10020710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.