Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58670 387 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) AT2G42670 374 / 7e-133 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT5G15120 218 / 2e-70 Protein of unknown function (DUF1637) (.1) AT5G39890 197 / 2e-62 Protein of unknown function (DUF1637) (.1) AT1G18490 189 / 3e-59 Protein of unknown function (DUF1637) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017645 [exp] 458 / 4e-166 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10033603 [exp] 450 / 6e-163 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10029828 [exp] 412 / 4e-145 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10015360 [exp] 215 / 4e-69 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10027254 [exp] 207 / 3e-66 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10038962 [exp] 201 / 5e-64 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10013620 [exp] 168 / 5e-51 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1) Lus10003861 [exp] 164 / 2e-49 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058000 [exp] 344 / 4e-121 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 340 / 3e-119 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) Potri.004G129400 [exp] 216 / 5e-70 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.015G055600 [exp] 202 / 2e-64 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 201 / 2e-64 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 196 / 1e-62 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 189 / 2e-59 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 183 / 3e-57 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10020711 pacid=23140865 polypeptide=Lus10020711 locus=Lus10020711.g ID=Lus10020711.BGIv1.0 annot-version=v1.0 ATGCCTTACTATATACAAAGACTGTACAATACTTGCAAGTCGTCATTGTCATCTAATGGCCCTGTATCGGAGGAGGCGCTCGAAAAAGTTCGCAATATGT TAGAGAAAATCAAGCCCTCCGATGTGGGTCTTGATCAGGAGGCACAACTGGTGCGCAAATGGACAGGTCCTATGCAAGAGCGCAATGGGCATCCTCCAAC ACTACCTCCAATCAAGTACCTACACTTGCATGAGTGTGACAGCTTCTCTATTGGGATATTCTGCATGCCACCAACTTCCATTATACCTCTTCATAACCAT CCTGGAATGACAGTATTAAGCAAGCTCATATACGGAACGATGCACGTGAAGTCATACGATTGGCTTGATTCATCTGAGACGGCTGACCCGGCAGAAGCAA GGCCTGCCAAGCTTGTGAAAGACCTGGACATGACTGCACCATGCAATTCGACAGTTCTTTATCCAACCACTGGAGGCAACCTCCACTGTTTCAGGGCCGT AACACCCTGCGCAATCTTTGACATTCTCTCCCCACCTTACTCTTCAGATCATGGACGGCACTGCTCTTATTTCAGGACATCTCCGATAAAAGATCTACCC GGCGAGCTCGAGTTGGATGGAGTCACAGTTTCGGATGTGACGTGGCTTGAAGAGTTCCAACCTCCCGATAACTTTGTGATACGAAGAGGTCTATACAAAG GTCCCCTAATTAGAACTTGA
AA sequence Show only first row Show all	>Lus10020711 pacid=23140865 polypeptide=Lus10020711 locus=Lus10020711.g ID=Lus10020711.BGIv1.0 annot-version=v1.0 MPYYIQRLYNTCKSSLSSNGPVSEEALEKVRNMLEKIKPSDVGLDQEAQLVRKWTGPMQERNGHPPTLPPIKYLHLHECDSFSIGIFCMPPTSIIPLHNH PGMTVLSKLIYGTMHVKSYDWLDSSETADPAEARPAKLVKDLDMTAPCNSTVLYPTTGGNLHCFRAVTPCAIFDILSPPYSSDHGRHCSYFRTSPIKDLP GELELDGVTVSDVTWLEEFQPPDNFVIRRGLYKGPLIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	0	1
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	2.6	0.7988
					Lus10007244 [exp]	6.2	0.7819
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	7.5	0.7572
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	7.9	0.7581
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	8.2	0.6641
					Lus10024103 [exp]	13.6	0.7555
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	17.7	0.7156
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	24.6	0.7313
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	25.5	0.6977
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	27.8	0.6929

Compare expression of checked genes

Lus10020711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.