Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15980 374 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G26680 142 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 132 / 2e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G01110 123 / 1e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 122 / 3e-29 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 118 / 7e-28 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 115 / 4e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 115 / 4e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 114 / 1e-26 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 114 / 1e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027916 [exp] 137 / 3e-34 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009548 [exp] 133 / 1e-33 AT4G26680 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10034421 [exp] 117 / 1e-27 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 115 / 7e-27 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 115 / 1e-26 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 112 / 6e-26 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 108 / 6e-25 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 107 / 3e-24 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 105 / 9e-24 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G149400 [exp] 468 / 5e-161 AT2G15980 477 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G110400 [exp] 182 / 1e-54 AT2G15980 195 / 3e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G166001 [exp] 146 / 4e-38 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 132 / 1e-32 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 127 / 5e-31 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 122 / 2e-29 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 121 / 8e-29 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 116 / 2e-27 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G131400 [exp] 115 / 3e-27 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 115 / 3e-27 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020712 pacid=23140922 polypeptide=Lus10020712 locus=Lus10020712.g ID=Lus10020712.BGIv1.0 annot-version=v1.0 ATGGCATTCGTGATCCTCAGACGGATGCATCTCTCGCCGCCGTCGAGACACAAACCCACCATCAATAACCCCAATCTCTCCCTTTTCTTCTTCTCCTCCT CCTTCTCATCCGTCTCCCAATCTCCGCCGTCCGATCAGAACCAAATAGTCTCCGACGTCGTCTCTCTCTTAACCAACCACCGCTTTAAATCCCGATGGAA CCACCTCCGATCTCTTCTTTCCGACCACACCCCACTCTCTTCCTCCGACTTCTCCCAGATAGCTCTCCAACTCAAATCCAACCCTCGCTTAGCCCTCAGC TTCTTCGACTTCACACAGCGCCGCCGCAACTCCCCCCTCTGCTCTCACGACGCTTACTCTTTCTCCGCCGTCATCCACCTCCTCGCCCGCGCCCGCCTCA AGTCCCAGTCGCAATCCGTCATTCGAACCGCTCTTCTCTCTCCCCAATTGCGTCGGCCCGGAGGCGAAGAATGTCAGAACCCTAATCCCGTCTACAATCC GCCGCTGAAACTGTTCGAAGCGCTGGTTAAAACCTACAGAACGTGCGATTCAGCTCCGTTCGTCTTCGATTTGCTGATCAAGTCGTGTCTGGAGCTGCAA AAAATCGACGAGTCTTTGGAGATGGTGAGAAAATTGAGGTCCCGCGGGATATCTCCTCAGATCAGCACTTGCAATTCGTTGATTTCGTCAGTTTCGAAGT GTAGAGGATCATATGCTAGCTATGATATGTTCAGAGAGTTGTTTGGATTGGAAGGAAGTGACGAAGTAAAGAAGGGGAGGAGAAGGGGGTTTAGAAATCC TCCAAATGTGCAGAGCTTCAATCTTTTGATGGAAGCGTTCTACAGAGACGGAGAAATGGAGATGGTGGAGGAAGTCTGGTCGGAAATGGATTGTGCAGCT AACGAGCTAAGTTACAGCGTTTTGCTATCTGTGTATTCTGAATCCGGGAAGATGATCGAAGCTGTAAACTTATGGGAAGATATGTTGCAGAAAGGGATAA AGCCCGGAGCTTTAGCTTACAACACCATGATCGGCGGGTTTTGTAACACTGGAGATTCAAGCAAAGCTGAGGAGTTCTTCAGAGAAATGGAGATGAGTGG AGTGGAGACTGGTAGTTGTGGGATAAGCTATGAACACTTGATTAGTGTGTACTGCAGAAATGGCGATGTAGATACGGCGATGGTGGTGTACAAGGACATG GTTAAGAAAGGATATTTCAGGCCTGTAGCAGCCACGATCGAGGTGTTGATCGGAGGTCTTTGTGAGAAGAGGAGGTGTTTGGAGGGGTTGGAGGTGATGA GATTTTGGATGAAGGATGCGAGTTTCTTTCCGAGTCGGAAGAGTTACGAGCTTCTGATAAAGGGGTTGTGTGAAGAAGGCGGGGATCGGTTGGAAGAAGC GAGGAAGCTTCAGGGCGAGATGGTGGGGAAAGGGTATAGGGTGAATGCAGAGGTTTATGGTGCTTTTATCGAAGGGTATGAGATGGCTGGAAATGGAGAA ATGGCAGAGCGGTTGAGGGAGGAAATGTGTACTGTACTAGGAGCAGAAAACTAG
AA sequence Show only first row Show all	>Lus10020712 pacid=23140922 polypeptide=Lus10020712 locus=Lus10020712.g ID=Lus10020712.BGIv1.0 annot-version=v1.0 MAFVILRRMHLSPPSRHKPTINNPNLSLFFFSSSFSSVSQSPPSDQNQIVSDVVSLLTNHRFKSRWNHLRSLLSDHTPLSSSDFSQIALQLKSNPRLALS FFDFTQRRRNSPLCSHDAYSFSAVIHLLARARLKSQSQSVIRTALLSPQLRRPGGEECQNPNPVYNPPLKLFEALVKTYRTCDSAPFVFDLLIKSCLELQ KIDESLEMVRKLRSRGISPQISTCNSLISSVSKCRGSYASYDMFRELFGLEGSDEVKKGRRRGFRNPPNVQSFNLLMEAFYRDGEMEMVEEVWSEMDCAA NELSYSVLLSVYSESGKMIEAVNLWEDMLQKGIKPGALAYNTMIGGFCNTGDSSKAEEFFREMEMSGVETGSCGISYEHLISVYCRNGDVDTAMVVYKDM VKKGYFRPVAATIEVLIGGLCEKRRCLEGLEVMRFWMKDASFFPSRKSYELLIKGLCEEGGDRLEEARKLQGEMVGKGYRVNAEVYGAFIEGYEMAGNGE MAERLREEMCTVLGAEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	0	1
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	1.7	0.8263
AT3G57910			D111/G-patch domain-containing...		Lus10023819 [exp]	2.8	0.7947
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	4.0	0.7855
AT4G34630			unknown protein		Lus10028793 [exp]	5.7	0.8029
AT2G25720			unknown protein		Lus10032479 [exp]	7.1	0.7841
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	7.7	0.7735
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004541 [exp]	8.5	0.7889
					Lus10010972 [exp]	9.1	0.8061
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	10.2	0.7886
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	11.5	0.7835

Compare expression of checked genes

Lus10020712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.