Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04520 142 / 1e-44 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 139 / 4e-43 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029827 [exp] 243 / 2e-84 AT2G04520 168 / 9e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10033806 [exp] 151 / 8e-48 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10014627 [exp] 151 / 8e-48 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000920 [exp] 148 / 9e-47 AT2G04520 252 / 1e-87 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002264 [exp] 143 / 1e-44 AT2G04520 248 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042438 [exp] 104 / 1e-29 AT2G04520 100 / 5e-28 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219200 [exp] 147 / 3e-46 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G160900 [exp] 146 / 6e-46 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 124 / 2e-37 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G093801 [exp] 54 / 1e-10 AT2G04520 76 / 2e-19 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10020713 pacid=23140852 polypeptide=Lus10020713 locus=Lus10020713.g ID=Lus10020713.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACAAAGGGAAAGGAGGCAAGACGAAGAAGAGGGGAAAGAACGACACGGAGCAAGAGAAGCGAGACCTCGTGTACAAGCAGGACCTGCAGG CGTACGCCAAAGTGGTGAAGATGCTGGGGAACAACCGCGTCGAAGCCAAATGCGACGACGAGGTCACGCGCCTCTGCCACATTCGAGGCACGATGCAGAA GAAGGTCTGGATTTCAAACAACGACATCATACTCGTGGGGCTGAGGGACTACGAGGACGCCAAGGCCGACATCATCTGGAAGTACCTGCCCGAAGAGGCT AGGCTACTCAAGGCTTATGGCGAGCTGCCTCCACATATGGCGGAGGATGACGAGGAATATATCGGTGAGAGTTACTTCGAATTCGAAGCTGAAGACATCG ATAAGATTTGA
AA sequence Show only first row Show all	>Lus10020713 pacid=23140852 polypeptide=Lus10020713 locus=Lus10020713.g ID=Lus10020713.BGIv1.0 annot-version=v1.0 MPKNKGKGGKTKKRGKNDTEQEKRDLVYKQDLQAYAKVVKMLGNNRVEAKCDDEVTRLCHIRGTMQKKVWISNNDIILVGLRDYEDAKADIIWKYLPEEA RLLKAYGELPPHMAEDDEEYIGESYFEFEAEDIDKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10020713 [exp]	0	1
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	1.7	0.9203
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	5.3	0.9099
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	6.3	0.9111
					Lus10015147 [exp]	14.8	0.8589
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	16.4	0.8704
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	18.1	0.9203
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	19.8	0.9178
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	21.4	0.9102
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	22.8	0.8883
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	24.3	0.9069

Compare expression of checked genes

Lus10020713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.