Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 296 / 1e-95 HXXXD-type acyl-transferase family protein (.1) AT1G03940 294 / 8e-95 HXXXD-type acyl-transferase family protein (.1) AT5G39090 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) AT3G29590 207 / 2e-61 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29635 201 / 6e-59 HXXXD-type acyl-transferase family protein (.1) AT3G29670 194 / 1e-56 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39080 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) AT5G61160 189 / 1e-54 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39050 182 / 4e-52 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29680 179 / 4e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031587 [exp] 450 / 1e-155 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 449 / 3e-155 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 395 / 2e-132 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10029826 [exp] 348 / 3e-119 AT1G03495 91 / 6e-21 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 267 / 2e-84 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 255 / 3e-79 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 239 / 1e-73 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 221 / 1e-66 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 208 / 2e-61 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 389 / 7e-132 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 386 / 1e-130 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 286 / 2e-91 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 226 / 1e-68 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 222 / 7e-67 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 217 / 5e-65 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 208 / 1e-61 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 208 / 2e-61 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 207 / 2e-61 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 207 / 2e-61 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020714 pacid=23140903 polypeptide=Lus10020714 locus=Lus10020714.g ID=Lus10020714.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACAATCATCAACAAATCAACCCACTCCACCACTTCCAAGTCTCTCCGCCGCCGGGAACTCTCTCGTCCGCCACCGTCACCCTTCCGTTCA CCTTCTTCGACGTCCTATGGCTCAACTCCCGCCCCATGAGCCGTCTCTTCTTCTACGACTTCCCACACCCGACCACTCACTTCACCCAATCCATCCTTCC AAACCTCCGCCGCTCCCTCTCAATCTCCCTCCAGCACTTCTTCCCCCTCGCCGGAAACCTCGTCGTCCCCCCTCCCCACCCGCCTCAGCCGCCGTTCTTC CGCTTCTCCGACGGCGTCGACTCTGTCTCGCTCACCGTCGCGGAGTCAACAGAGGATAATTACGACCAGTTGACTAAGAATCACCCGAGGGACGTGACGG AATTTCATCCGTTTGTTCCGGAGCTGAATCCTCCGATTGTTGAATCCGACGGCTCGAGATTGTTCTCGCTGTTGGCTCTGCAGGTTACTCTGTTTCCGAA CAGAGGACTCTGTATTGGAGTCAGGTTTCATCATGCTGCAGCTGACGGCATGGCTTTCCACCATTTTATGAAATTTTGGGCTTCTTTGCTCCGATCCGGC TGCGACCTCAGCTCCTCCGACGTCCCGCTGCCGTGTCACGATAGGGAAATGATCAGGGAAAAATTCGTCGACTTGGAATCAACCATGTTAAAGCAGTATT TCGAGTGGCTGTCGTCATGGAACTACGACGCCGGAGCATCTCGACACTTGAACCTCTCCGACAAGGTCCGAGCAACGTTCGTGATCACAAGGTCGCAACT CGAAAGTTTAAAAACCACCGTACGCGAAACAAATCCAGATTACAAGCATCTCCACATCTCTTCTTTCGTGGTGACGTGCGCCGTAGTCTGGGTGGCTTTA ATAAAATCCGAAGGCTTAGGAGACTCATCGGACGACCCGGACAGAATCTACCACTTCGGCTTCTCTGCCGACTGCCGGCGCCGGCTGGGAATCGAGCTGC CGGAGACGTACTTCGGGAATTGTATAAGTCCGACTCTTATACCGGGGACGAGAGGGGAGCTGTTGGGAAGAGGAGGGATTGCTAGAGCGGCGGAGTTGAT CGGGAAGAGGGTGACGGAGTTGGTGGAGAGCGACGGCGGGGTGGCGGCGGCGGGGAGAGTGGTGGCGGAGTGGAAGCAAGTGGCTGAAGGAGGGAGAGTG ATTGTGATTGCCGGGTCGCCGAAGCTGAAGGCTTACGAGACGGATTTCGGGTGGGGGAGGCCGAGGAAGAGCGAGGTTGTGCAGGTTGATAGTTCGAGAT CGGTGTCGCTGTGCGAGAGCGGAGATGGGAGCGGCGGAGTTGAGGTTGGGCTGGCGTTGGATGTCCGGAAAATGGATGTTTTCGGGTCGTTGATTGCGGA GTTTCTTGGCTGA
AA sequence Show only first row Show all	>Lus10020714 pacid=23140903 polypeptide=Lus10020714 locus=Lus10020714.g ID=Lus10020714.BGIv1.0 annot-version=v1.0 MAANNHQQINPLHHFQVSPPPGTLSSATVTLPFTFFDVLWLNSRPMSRLFFYDFPHPTTHFTQSILPNLRRSLSISLQHFFPLAGNLVVPPPHPPQPPFF RFSDGVDSVSLTVAESTEDNYDQLTKNHPRDVTEFHPFVPELNPPIVESDGSRLFSLLALQVTLFPNRGLCIGVRFHHAAADGMAFHHFMKFWASLLRSG CDLSSSDVPLPCHDREMIREKFVDLESTMLKQYFEWLSSWNYDAGASRHLNLSDKVRATFVITRSQLESLKTTVRETNPDYKHLHISSFVVTCAVVWVAL IKSEGLGDSSDDPDRIYHFGFSADCRRRLGIELPETYFGNCISPTLIPGTRGELLGRGGIARAAELIGKRVTELVESDGGVAAAGRVVAEWKQVAEGGRV IVIAGSPKLKAYETDFGWGRPRKSEVVQVDSSRSVSLCESGDGSGGVEVGLALDVRKMDVFGSLIAEFLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	3.0	0.9756
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	6.9	0.9709
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014226 [exp]	7.5	0.9588
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	10.0	0.9665
					Lus10002336 [exp]	11.7	0.9708
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	12.6	0.9725
AT1G11410			S-locus lectin protein kinase ...		Lus10007609 [exp]	14.1	0.9452
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	17.0	0.9455
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	17.9	0.9208
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	18.0	0.9489

Compare expression of checked genes

Lus10020714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.