Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42740 331 / 6e-118 RPL16A ribosomal protein large subunit 16A (.1) AT5G45775 331 / 8e-118 Ribosomal L5P family protein (.1.2) AT4G18730 331 / 8e-118 RPL16B ribosomal protein L16B (.1) AT3G58700 331 / 8e-118 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033607 [exp] 343 / 2e-122 AT2G42740 362 / 7e-130 ribosomal protein large subunit 16A (.1) Lus10029824 [exp] 335 / 4e-119 AT2G42740 347 / 5e-124 ribosomal protein large subunit 16A (.1) Lus10017648 [exp] 322 / 3e-114 AT2G42740 343 / 1e-122 ribosomal protein large subunit 16A (.1) Lus10007915 [exp] 53 / 2e-08 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 52 / 4e-08 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068900 [exp] 332 / 2e-118 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181600 [exp] 332 / 2e-118 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181501 [exp] 332 / 2e-118 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.011G069200 [exp] 330 / 2e-117 AT2G42740 318 / 1e-112 ribosomal protein large subunit 16A (.1) Potri.002G109701 [exp] 112 / 9e-33 AT2G42740 127 / 5e-39 ribosomal protein large subunit 16A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00673 [flax] [poplar] Ribosomal_L5_C ribosomal L5P family C-terminus CL0652 [flax] [poplar] S24e_L23_L15e PF00281 [flax] [poplar] Ribosomal_L5 Ribosomal protein L5
Representative CDS sequence Show only first row Show all	>Lus10020715 pacid=23140872 polypeptide=Lus10020715 locus=Lus10020715.g ID=Lus10020715.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAAAGGAAGCTGAGTAACCCCATGAGGGAAATTAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGTGAGAGCGGCGATCGTCTCACCA GAGCCGCCAAGGTGTTGGAACAGCTCAGTGGACAGACCCCTGTCTTCTCTAAAGCTAGGTACACTGTTAGGTCTTTTGGTATCAGGCGTAACGAAAAGAT TGCTTGCTATGTCACTGTGAGAGGTGAGAAGGCAATGCAACTCTTGGAGAGTGGATTGAAGGTTAAGGAGTACGAATTGCTCAGAAAGAACTTCAGTGAC ACTGGCTGCTTTGGGTTCGGTATCCAGGAGCACATTGATCTTGGCATCAAGTACGATCCCTCCACTGGTATCTACGGGATGGACTTCTTTGTCGTGCTTG AGCGTCCTGGATACCGTGTTGCCAGGCGCCGTAGGTGCAAGGCCCGTGTCGGAATTCACCAGAGGGTTACAAAGGAGGATTCCATGAAGTGGTTCCAGGT CAAGTACGAGGGTGTTATCCTTAACAAGGCCCAGAACATCACTGGTTAA
AA sequence Show only first row Show all	>Lus10020715 pacid=23140872 polypeptide=Lus10020715 locus=Lus10020715.g ID=Lus10020715.BGIv1.0 annot-version=v1.0 MAAERKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRKNFSD TGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVARRRRCKARVGIHQRVTKEDSMKWFQVKYEGVILNKAQNITG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	1.0	0.9778
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	2.0	0.9719
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10020615 [exp]	3.5	0.9648
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	4.2	0.9716
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	4.5	0.9706
AT5G27700			Ribosomal protein S21e (.1)		Lus10029895 [exp]	4.6	0.9582
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	5.7	0.9663
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	6.9	0.9681
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	7.2	0.9715
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	8.1	0.9649

Compare expression of checked genes

Lus10020715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.