Plant FIBer expression Database

Lus10020716 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023645
[exp]
71 / 8e-15 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Lus10018544
[exp]
66 / 2e-13 ND /
Lus10037440
[exp]
64 / 3e-12 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1)
Lus10018543
[exp]
59 / 9e-11 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10023643
[exp]
51 / 4e-08 ND 38 / 0.008
Lus10008360
[exp]
47 / 2e-06 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10020716 pacid=23140960 polypeptide=Lus10020716 locus=Lus10020716.g ID=Lus10020716.BGIv1.0 annot-version=v1.0
ATGGCGAGATTTCCCCAGTTTCAAACTGTTACAATTTCCTGGCCATTTCACAACAACAATGTTGAGTTCCGAGAGTACGAAGTGGGTCATGCTACTATAT
CACCACCGAATATCGAGCACCTAACCATTAGGGCGCCTATACGGTCGACAAGAGACCAAACAGCTCTTTTGAACGTTGCGTTGTGGACTTGCCGTCCTAG
GTACTTGACACTGATTCACGACGATGATATTGGATGTTCTGGAATGATTGTCCTCGTCTTTATATCGCAATATATGCGTACACTTTCCTCGAATGAATAC
AAAGAAGGGCTCTATGAGAGTAGAAGCTGGCAACGACAGTTGAAAGATGTGAAAAATATAACTGGAGATGTTAGAGATGGTCACCAAGTTCGCTTGGCGT
TAACTTTGTTTCTGAACACGCCACTAGTAAACAGTCATTTGTATGTAATTATATATGCTATCAAATGA
AA sequence
>Lus10020716 pacid=23140960 polypeptide=Lus10020716 locus=Lus10020716.g ID=Lus10020716.BGIv1.0 annot-version=v1.0
MARFPQFQTVTISWPFHNNNVEFREYEVGHATISPPNIEHLTIRAPIRSTRDQTALLNVALWTCRPRYLTLIHDDDIGCSGMIVLVFISQYMRTLSSNEY
KEGLYESRSWQRQLKDVKNITGDVRDGHQVRLALTLFLNTPLVNSHLYVIIYAIK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10020716
[exp]
0 1
AT4G17250 unknown protein Lus10008508
[exp]
6.6 0.7948
AT3G11280 MYB Duplicated homeodomain-like su... Lus10028264
[exp]
11.6 0.7683
AT4G37420 Domain of unknown function (DU... Lus10016022
[exp]
17.2 0.7468
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Lus10018018
[exp]
25.6 0.7516
AT2G39210 Major facilitator superfamily ... Lus10037948
[exp]
60.0 0.6750
AT5G07840 PIA1 phytochrome interacting ankyri... Lus10033816
[exp]
61.0 0.7448
AT1G12855 F-box family protein (.1) Lus10042738
[exp]
66.9 0.7422
AT4G32680 unknown protein Lus10035889
[exp]
77.7 0.7039
AT2G47600 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, ... Lus10030365
[exp]
85.3 0.6677
AT5G43280 ATDCI1 "delta\(3,5\),delta\(2,4\)-die... Lus10002583
[exp]
86.9 0.7228

Lus10020716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.