Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06680 350 / 9e-123 PSII-P, OEE2, PSBP-1, OE23 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) AT2G30790 212 / 2e-70 PSBP-2 photosystem II subunit P-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029823 [exp] 476 / 3e-172 AT1G06680 375 / 2e-132 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Lus10030326 [exp] 48 / 3e-06 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 47 / 4e-06 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206700 [exp] 359 / 3e-126 AT1G06680 400 / 2e-142 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Potri.002G055700 [exp] 348 / 7e-122 AT1G06680 382 / 3e-135 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10020717 pacid=23140868 polypeptide=Lus10020717 locus=Lus10020717.g ID=Lus10020717.BGIv1.0 annot-version=v1.0 ATGGCATCCACAGCATGCTTCCTCCACCACGCCGCACTCACCACCTCCACCAGGACCTCCGCTGCCGGTCAACGCCTTCAATCTCCTTCCTCCTCCCCTG CCGCAGCCAGGCTAGTCTGCCGCGCTCAGAAACAGCAGTCCACTGAAGATCAGGACACCGGCGCCGTGTCTCGTAGATTCGCCCTCACTCTCCTCGCCGG AGCTGCCGCAATCGGATCCAAGACCGCCCCCGCCGAGGCCGCCTATGGCGAAACCGCGAACATTTTCGGGAAGCCGAAGACGAACACTGAGTTCCAGGAG TACAGTGGAGCAGGGTTCAAGCTCTCGATCCCCTCCAAGTGGAACCCTAGCAAAGAGGTTGAGTATCCAGGTCAGGTGATGAGATACGAAGACAACTTCG ACGCCAATAGCTACCTCGCTGTGATGGTTAACCCTACTGACAAAAAATCCATCACCGATTACGGCTCCCCTGAAGACTTCCTTTCTCAGGTCGCCTTCTT GCTCGGAAAGCAGGCCTACTTCGGCAAGACCGATTCTGAGGGAGGGTTCCAGTCAGGGGAGGTGGCCACTGCCAACATCCTGGAGACATCGGCACCGGTG GTGGGAGGAAAGCAGTACTACATCGTGTCGGTGCTGACGAGGACGGCCGACGGAGACGAAGGAGGGAAGCACCAGCTGATCAGCGCTACGGTGACAGATG GGAAGCTTTACATTTGCAAGGCACAAGCTGGAGACAAGAGGTGGTTCAAAGGTGCTAGGAAGTTCGTTGAGAGTGCTGCTACTTCCTTCAGCGTCGCCTA A
AA sequence Show only first row Show all	>Lus10020717 pacid=23140868 polypeptide=Lus10020717 locus=Lus10020717.g ID=Lus10020717.BGIv1.0 annot-version=v1.0 MASTACFLHHAALTTSTRTSAAGQRLQSPSSSPAAARLVCRAQKQQSTEDQDTGAVSRRFALTLLAGAAAIGSKTAPAEAAYGETANIFGKPKTNTEFQE YSGAGFKLSIPSKWNPSKEVEYPGQVMRYEDNFDANSYLAVMVNPTDKKSITDYGSPEDFLSQVAFLLGKQAYFGKTDSEGGFQSGEVATANILETSAPV VGGKQYYIVSVLTRTADGDEGGKHQLISATVTDGKLYICKAQAGDKRWFKGARKFVESAATSFSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	0	1
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	1.0	0.9810
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	2.0	0.9758
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	2.8	0.9689
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10017245 [exp]	3.0	0.9488
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	3.5	0.9702
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	4.7	0.9471
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	5.3	0.9522
AT4G01150			unknown protein		Lus10012645 [exp]	5.5	0.9535
AT3G12345			unknown protein		Lus10023468 [exp]	5.8	0.9344
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	6.9	0.9524

Compare expression of checked genes

Lus10020717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.