Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10260 301 / 6e-104 Reticulon family protein (.1.2.3) AT3G61560 192 / 5e-61 Reticulon family protein (.1.2) AT2G46170 191 / 2e-60 Reticulon family protein (.1.2) AT4G23630 186 / 3e-58 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT5G41600 180 / 4e-56 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G11220 179 / 1e-55 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT1G64090 178 / 2e-55 RTNLB3 Reticulan like protein B3 (.1.2) AT3G18260 173 / 7e-54 Reticulon family protein (.1) AT4G01230 150 / 1e-44 Reticulon family protein (.1) AT3G10915 127 / 4e-36 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029822 [exp] 469 / 4e-170 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Lus10027548 [exp] 207 / 1e-66 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10038833 [exp] 204 / 2e-65 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 204 / 2e-65 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027546 [exp] 203 / 4e-65 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10039307 [exp] 197 / 6e-63 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10041080 [exp] 187 / 6e-59 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10036405 [exp] 186 / 2e-58 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10032313 [exp] 182 / 1e-56 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055600 [exp] 343 / 2e-120 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 328 / 2e-114 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.001G097700 [exp] 206 / 3e-66 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 203 / 3e-65 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 202 / 1e-64 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 201 / 2e-64 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 192 / 6e-61 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 186 / 9e-59 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.013G160900 [exp] 169 / 3e-52 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.012G054100 [exp] 150 / 3e-45 AT3G18260 238 / 6e-80 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10020718 pacid=23140817 polypeptide=Lus10020718 locus=Lus10020718.g ID=Lus10020718.BGIv1.0 annot-version=v1.0 ATGCCTGAGAAAAGCACTGCAGAGGATATCCTCACAAATCTGGTTGAAACCTTTGCTGAGAACATCCCGAAGCAGAAATCAGGGTCGTTCTTTGAAGAAG ATAACCGAACTGCATTTCAATTCAATAGATTGTTTTCACGTGAGAAGCCCATCCATAACATCTTGGGTGGTGGTAAATCTGCTGATGTCCTGTTATGGAG GAACAAGAAGATCTCTGCTAGCGTCCTAGCTTCTGCAACTGCTATCTGGGTGCTATTCGAGTGGCTTAATTACCATTTCCTCACTCTCGTGTGCTTGGCT CTGGTCCTTGGTTTGCTTGCTCAATTCATGTGGAGGAATGTTTCAGGTCTACTGAACAGGTCACCATCTAAGGTCCCCCGACTTGTGCTACCAGAGGAGT TGTTTGCCAACATCGGCAAATCTGTTGGTGCAGAGGTTAATCGTGGTCTGCATATGCTTCAAAATGTGTCATGCGGAGGGAACTTGAAACATTTCATAGT GGCTATTGCGAGCTTGTGGGCTGTTTCAGTGATTGGAAGCTGGTTCAACTTCATAACTGTACTATACATTGGTTTCGTCGCTGCTCACGCGCTGCCAGTA CTGTACGAGAGGTACCAGGATCAAGTGGACGACTTCGCCTGCAAGGTATTCGAACAGCTCCGAGGCCATTACCAGAAGCTCGATACGGGTCTCCTGAGCA AGATCCCAAAGGGAAGGGGAAAGAAGGATGACTGA
AA sequence Show only first row Show all	>Lus10020718 pacid=23140817 polypeptide=Lus10020718 locus=Lus10020718.g ID=Lus10020718.BGIv1.0 annot-version=v1.0 MPEKSTAEDILTNLVETFAENIPKQKSGSFFEEDNRTAFQFNRLFSREKPIHNILGGGKSADVLLWRNKKISASVLASATAIWVLFEWLNYHFLTLVCLA LVLGLLAQFMWRNVSGLLNRSPSKVPRLVLPEELFANIGKSVGAEVNRGLHMLQNVSCGGNLKHFIVAIASLWAVSVIGSWFNFITVLYIGFVAAHALPV LYERYQDQVDDFACKVFEQLRGHYQKLDTGLLSKIPKGRGKKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	0	1
AT2G37480			unknown protein		Lus10025314 [exp]	2.2	0.9167
AT5G09960			unknown protein		Lus10006803 [exp]	6.6	0.9035
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	9.6	0.8936
AT1G76405			unknown protein		Lus10016039 [exp]	11.0	0.8665
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	13.0	0.8836
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	13.6	0.8301
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	14.7	0.8807
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027229 [exp]	17.0	0.8712
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	27.7	0.8797
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	29.3	0.8633

Compare expression of checked genes

Lus10020718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.