Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52920 566 / 0 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT2G20770 555 / 0 GCL2 GCR2-like 2 (.1) AT5G65280 343 / 2e-115 GCL1 GCR2-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033701 [exp] 536 / 0 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10025736 [exp] 350 / 1e-117 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10035926 [exp] 342 / 1e-114 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10031638 [exp] 223 / 2e-68 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10034698 [exp] 48 / 3e-07 AT1G52920 47 / 7e-08 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403200 [exp] 612 / 0 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.013G134700 [exp] 530 / 0 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.005G072500 [exp] 366 / 2e-124 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 348 / 2e-117 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.011G122300 [exp] 186 / 3e-57 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF05147 [flax] [poplar] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Lus10020719 pacid=23140885 polypeptide=Lus10020719 locus=Lus10020719.g ID=Lus10020719.BGIv1.0 annot-version=v1.0 ATGGCCGATCGTTACTTCTCAAACGAACTCCCTGACTTCGAATCTGCAGAATCGGCTACAGAGGAAAACGAATCTCTCACGAAACTTCTCTCTCTTCCTC ATTCTACCCTCTCCCAAACACTCCAGCGTTCCGCCTTGGAAATCAAAGATACTGTGGTAATGGAAACGCTGGGCTCAAGCGAGAGGCGCGTGACAGATTA CACTTTGTATACCGGGATGCTAGGTACTGCTTACCTGCTGCTTAAAGCTTACCAAATCACCAACAACGCCGATGATCTCAATTTATGCTCGGAGATCATA CAAGCCTGTGATTCTGCATCCAGAAATTCCAGTCATGTGACATTTATATGCGGACGAGCTGGCGTTTGTGCTCTTGGTGCCGTCACTGCAAAACATTCTG GTGATCAAAGACTCTTAGAATACTACGTTACACAGTTCAAGCAGATCAGACTTCCAAGTAATATACCGAACGAGTTATTGTACGGGAGAGCCGGGTACTT ATGGGCATGCTCGTTTCTAAATCGGCATGTTGGTGAAGAAACAGTATCACACAGTCGAATGAGGGTAGTTGTTGATGAAATGATCAAGAGTGGCAGAAGA ATGGCACGAGATGGGTGTCCGTTGATGTACGAGTGGCACGGGAAGAAGTACTGGGGAGCTGCACATGGACTGGCTGGGATCATGCATGTGTTGATGGATA TGCAACTGAATGAAAGTGAGATTGATGATGTGAAGGGTACACTTCGTTACATGATTCGGAATCGGTTCCCGAGTGGTAATTACCCTTCCAGCGAAGGAAG TCGAAATGACCGTCTTGTGCATTGGTGCCATGGTGCTCCTGGAGTTGCACTCACACTCGTCAAAGCAGCTGAGGTATTTGGAGAGGAGGAGTTTCTGCAA GCTGCGGTGGACGCTGGGGAGGTGGTTTGGAATCGGGGTCTGCTCAGGCGAGTTGGTATATGTCACGGCATCAGTGGGAACGCCTATGTCTTCCTTTCGC TGTATCGATTAACCAGGGATCCAAAGTACTTGCATCGAGCAAAGGCGTTTGCATGCTTTCTGCACGAAGGAGGTCAAAGGCTTATATCAGAAGGCAAGAT GCACGGAGGCGATCGGCCACATTCGTTGTTTGAAGGCATTTGCGGAATGGCTCACCTCTTTTTGGACATGACTGAACCATCTCAAGCAAGGTTCCCAGCA TATGAAGTGTAG
AA sequence Show only first row Show all	>Lus10020719 pacid=23140885 polypeptide=Lus10020719 locus=Lus10020719.g ID=Lus10020719.BGIv1.0 annot-version=v1.0 MADRYFSNELPDFESAESATEENESLTKLLSLPHSTLSQTLQRSALEIKDTVVMETLGSSERRVTDYTLYTGMLGTAYLLLKAYQITNNADDLNLCSEII QACDSASRNSSHVTFICGRAGVCALGAVTAKHSGDQRLLEYYVTQFKQIRLPSNIPNELLYGRAGYLWACSFLNRHVGEETVSHSRMRVVVDEMIKSGRR MARDGCPLMYEWHGKKYWGAAHGLAGIMHVLMDMQLNESEIDDVKGTLRYMIRNRFPSGNYPSSEGSRNDRLVHWCHGAPGVALTLVKAAEVFGEEEFLQ AAVDAGEVVWNRGLLRRVGICHGISGNAYVFLSLYRLTRDPKYLHRAKAFACFLHEGGQRLISEGKMHGGDRPHSLFEGICGMAHLFLDMTEPSQARFPA YEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	0	1
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	1.0	0.9308
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	7.2	0.9220
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	8.1	0.9177
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	8.5	0.9107
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	11.1	0.9210
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030169 [exp]	14.3	0.8501
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	14.6	0.9212
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	16.0	0.8995
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	17.3	0.9119
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	17.9	0.9088

Compare expression of checked genes

Lus10020719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.