Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30970 753 / 0 ASP1 aspartate aminotransferase 1 (.1.2) AT5G19550 417 / 2e-144 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 414 / 3e-142 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT1G62800 404 / 2e-139 ASP4 aspartate aminotransferase 4 (.1.2) AT4G31990 397 / 6e-136 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029796 [exp] 894 / 0 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 547 / 0 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10043222 [exp] 429 / 7e-149 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 426 / 7e-148 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 419 / 4e-144 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 409 / 2e-140 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10000181 [exp] 347 / 2e-117 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2) Lus10001753 [exp] 285 / 2e-92 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143300 [exp] 777 / 0 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 616 / 0 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.018G082500 [exp] 423 / 1e-146 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 421 / 3e-145 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G260200 [exp] 405 / 9e-139 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 402 / 9e-138 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G241500 [exp] 375 / 1e-127 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10020720 pacid=23140808 polypeptide=Lus10020720 locus=Lus10020720.g ID=Lus10020720.BGIv1.0 annot-version=v1.0 ATGGCGCTCAGGCATGCTTTGTCTTCGAGGTTGACTCAGCAGAGGGGTTGGACAGCTGGCTTCGGAGCTAGCCGAGCTATGTCGTCGTGGTGGCAGAGCG TGGAGCCTGCTCCCAAGGATCCGATTCTCGGCGTCACGGAAGCCTTCCTCGCGGATTCGAGTCCAGATAAAGTCAATGTTGGAGTTGGTGCGTACCGTGA TGATAATGGAAAACCGGTGGTTTTGGACTGCGTCAGAGAAGCGGAGCGGAGGATCGCCGGTAACTTGAACATGGAGTATCTTCCCATGGGCGGTAGCGTC AATATGGTGGATGAAACGCTGAAGCTTGCTTATGGGGAGAATTCCGAGTTTCTTAAAGATAAAAGGGTTGCTGCAGTTCAAGCTCTATCCGGGACTGGCG CATGCAGGCTTTTTGCAGAATTCCAGAAGCGCTTCCGTCCCGACTCTCAAATCTACATTCCTGTTCCGACATGGTCAAACCACCACAACATTTGGAGGGA TGCTCATGTGCCTGAGAGGACTTATCATTACTACCATGCTGAGTCCAGGGGATTAGATTTTGCTTCGCTGATGGATGATATTAAGAATGCTCCAAATGGC TCGTTCTTTTTGCTTCACGCCTGTGCTCACAATCCTACCGGGGTCGATCCTTCAGAAGAACAATGGAGAGAGATCTCACATGTAATCAAGGAAAAAGGTC ATTTCCCCTTCTTTGATATGGCATATCAAGGCTTTGCCAGTGGTGATCCAGAAAGAGATGCAAAGTCTATCAGGATCTTCCTTGAGGATGGTCATCATAT TGGCATTTCACAATCATATGCCAAAAACATGGGGCTTTATGGTCAGAGGGTAGGATGTCTCAGTATCCTGTGTGAAAACGAGAAACAAGCTGTGGCAGTA AAAAGTCAGTTGCAGATGATTGCAAGGCCCATGTACAGCAATCCTCCTGTTCATGGTGCCCTAATTGTTTCAACAATCCTTGGAGATCCGGAGCTTAAGA AATTATGGCTCAAGGAAGTTCAGGTAATGGCTGATCGCATCATTGGAATGAGGACTGCTCTCAGAGAAAACCTTGAAAACTTGGGGTCGCCATTGTCATG GAAGCACATCACTGAGCAGATCGGGATGTTCTGCTACAGCGGAATGTCACCGGAACAGGTTGATCGCTTGACGAAAGAGTTCCACATCTACATGACACGA AATGGTCGAATCAGTATGGCTGGGGTGACGACAGGCAATGTCCGATACTTGGCAAACGCTATTCATGAGGTTACAAAGTCTGCTTAA
AA sequence Show only first row Show all	>Lus10020720 pacid=23140808 polypeptide=Lus10020720 locus=Lus10020720.g ID=Lus10020720.BGIv1.0 annot-version=v1.0 MALRHALSSRLTQQRGWTAGFGASRAMSSWWQSVEPAPKDPILGVTEAFLADSSPDKVNVGVGAYRDDNGKPVVLDCVREAERRIAGNLNMEYLPMGGSV NMVDETLKLAYGENSEFLKDKRVAAVQALSGTGACRLFAEFQKRFRPDSQIYIPVPTWSNHHNIWRDAHVPERTYHYYHAESRGLDFASLMDDIKNAPNG SFFLLHACAHNPTGVDPSEEQWREISHVIKEKGHFPFFDMAYQGFASGDPERDAKSIRIFLEDGHHIGISQSYAKNMGLYGQRVGCLSILCENEKQAVAV KSQLQMIARPMYSNPPVHGALIVSTILGDPELKKLWLKEVQVMADRIIGMRTALRENLENLGSPLSWKHITEQIGMFCYSGMSPEQVDRLTKEFHIYMTR NGRISMAGVTTGNVRYLANAIHEVTKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	0	1
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	1.7	0.9571
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	2.2	0.9546
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	2.8	0.9569
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	3.5	0.9567
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	3.5	0.9548
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	5.2	0.9438
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	5.9	0.9478
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	6.2	0.9354
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	7.1	0.9195
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	9.2	0.9052

Compare expression of checked genes

Lus10020720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.