Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 271 / 6e-86 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39050 266 / 1e-83 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 263 / 2e-82 HXXXD-type acyl-transferase family protein (.1) AT3G29670 253 / 9e-79 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39090 246 / 3e-76 HXXXD-type acyl-transferase family protein (.1) AT5G39080 243 / 6e-75 HXXXD-type acyl-transferase family protein (.1) AT5G61160 236 / 3e-72 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 228 / 4e-69 HXXXD-type acyl-transferase family protein (.1) AT1G03495 184 / 1e-52 HXXXD-type acyl-transferase family protein (.1) AT1G03940 180 / 6e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035802 [exp] 651 / 0 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 578 / 0 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10036582 [exp] 458 / 3e-153 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10005362 [exp] 369 / 1e-123 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 357 / 8e-119 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 354 / 2e-117 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 335 / 5e-110 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10029797 [exp] 325 / 6e-110 AT5G39050 78 / 9e-17 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 320 / 2e-104 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 405 / 1e-137 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 395 / 1e-133 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 394 / 4e-133 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 355 / 6e-118 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 345 / 4e-114 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 342 / 5e-113 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 341 / 2e-112 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 340 / 3e-112 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 340 / 3e-112 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096066 [exp] 336 / 2e-110 AT5G39050 273 / 2e-86 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020721 pacid=23140894 polypeptide=Lus10020721 locus=Lus10020721.g ID=Lus10020721.BGIv1.0 annot-version=v1.0 ATGGCAGCAAATCCAACTACTAACATTTTTCCTCCTCCCCTGCTTTTCTTCTTTCATTTTCCCATTGCCGCCTTTATGGCTTCCAATTCGGCGGTCGAAG TCCTCGACGTTCTCAAAGTCACACCGGAACCGGCGCCGTCCACTCCATTCTCCCTCGGTCTAACCTTCTTCGACACTCTGTGGATTAAATTCCCTCCGGT TGAGCGCATCTTTCTCTACCAAGTCCCAAATCTATCCTCCGACTTATTCCGATCACAACTCATTCCAAAACTCCGTCGCTCTCTGTCGCTCACTCTCCAC TACTTCCTCCCTCTCGCCGGAAGCATCACTTGGCCTACTTCAGACCTCGACAACGCCATCCTCCCGATCATCCTCTACACCCCCGGCGATGCCGTCTTCC TCACCGTCGCCGAGTCAACCGACAACTTTGACCATATCGCCAGCGACGAAGCTCGCCAAGCTTCCGATTCACTCGCTTACATACCGGAGTTTCCCGTCAC CGATTCAGCTGCCACGATTCTGTCTCTGCAGATCACTCTGTTCCCCAATCGTGGATTCTGTATCGGCTTATCTACTCACCACAGCATTCTCGACGGCAAA ACGCAAGCTATGTTCGTAAAAGCATGGGCTCATACTTGCAGGCTGATCGGAGATGACGACAACGGTCCTTCTCCCTTGCCGGAGGCACTCACTCCGGTCT TCGGTCGGATGCGATTCGTCGATTCAGATGAGATTGCATTGGAGTATTGGAACAATTGGTTCCAGCTCCGGCAGCAGCTTCCAGGTATGGATCCGAATCC AAACCCTAGAAGCTTGGAGCTGCTATGGAGTTTGGTAGATAGTGAATCGAAACGATTGCGAGCAGCGTTCCACTTCTCCAGAGAAAGAATCAACAAATTG AAGGAAGCATTGATCCCGAAAATAGAAAATCCTAATTATTTGTCGAGCTTCGTAATCACTCTGGCGCACACCGCCGTTTGCCTCGTGAAGGCGAAAAGGG AGCTGAGAGGAGAGTCGGCGACGATCCAGCTAGCGTTCACTGCCGACTTCAGATCGCGATTGGATCCTCCGGCGCCGGAGAATTTCTTCGGCAACTGTGT GTCCCCGTTCGAAGTTGTCCTGCATGCAGCGGAGGCGGTGGACGAAGACGGCGGCGCGGCGTACACGGCGGGGAAGATCATAGAGACGATCAAGGTGTTG GAGCAAGGAGTTTTGGTGGGAGCGAAGGAGAGGCTAGCTAATTTTCTGTTTACGGGAAAACCGGAGTTCGCGGTCGGAGTGGCAGGGTCGCCGAGGCTGG GGATGTACGGAGTGGATTTCGGTTACGGAAGGCCAGCGAAGGTTGAGATCACGTCGACGGCGAGGACGGGAGCTATTTCTTTGGCGGAGAGTATAGTTTG GAGCGGCGGAGTTGAGGTGGCGGTTGTGTTGAAGCCGGAAGAAATGGATGTATTCTGTGCTGCGTTCACCGGAGGAAGTGAATGGGAATAG
AA sequence Show only first row Show all	>Lus10020721 pacid=23140894 polypeptide=Lus10020721 locus=Lus10020721.g ID=Lus10020721.BGIv1.0 annot-version=v1.0 MAANPTTNIFPPPLLFFFHFPIAAFMASNSAVEVLDVLKVTPEPAPSTPFSLGLTFFDTLWIKFPPVERIFLYQVPNLSSDLFRSQLIPKLRRSLSLTLH YFLPLAGSITWPTSDLDNAILPIILYTPGDAVFLTVAESTDNFDHIASDEARQASDSLAYIPEFPVTDSAATILSLQITLFPNRGFCIGLSTHHSILDGK TQAMFVKAWAHTCRLIGDDDNGPSPLPEALTPVFGRMRFVDSDEIALEYWNNWFQLRQQLPGMDPNPNPRSLELLWSLVDSESKRLRAAFHFSRERINKL KEALIPKIENPNYLSSFVITLAHTAVCLVKAKRELRGESATIQLAFTADFRSRLDPPAPENFFGNCVSPFEVVLHAAEAVDEDGGAAYTAGKIIETIKVL EQGVLVGAKERLANFLFTGKPEFAVGVAGSPRLGMYGVDFGYGRPAKVEITSTARTGAISLAESIVWSGGVEVAVVLKPEEMDVFCAAFTGGSEWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	0	1
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	2.0	0.7506
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	4.5	0.6694
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	4.5	0.6357
AT5G06440			unknown protein		Lus10013601 [exp]	9.8	0.6757
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	11.0	0.7229
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	13.0	0.6462
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	16.1	0.6685
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10006991 [exp]	26.8	0.6040
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	28.6	0.6341
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	29.8	0.6460

Compare expression of checked genes

Lus10020721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.