Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 392 / 1e-136 SAG12 senescence-associated gene 12 (.1) AT5G50260 369 / 3e-127 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 366 / 4e-126 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 363 / 5e-124 Granulin repeat cysteine protease family protein (.1) AT3G49340 348 / 2e-119 Cysteine proteinases superfamily protein (.1) AT2G27420 347 / 6e-119 Cysteine proteinases superfamily protein (.1) AT4G35350 347 / 1e-118 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G29090 346 / 2e-118 Cysteine proteinases superfamily protein (.1) AT5G43060 347 / 2e-117 Granulin repeat cysteine protease family protein (.1) AT3G19400 340 / 4e-116 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029799 [exp] 694 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10009145 [exp] 677 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10028502 [exp] 673 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 672 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10042295 [exp] 662 / 0 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10026073 [exp] 660 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10006542 [exp] 660 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 658 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 658 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 550 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 549 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 544 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 544 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 543 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 541 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 493 / 1e-176 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 484 / 1e-173 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 474 / 1e-169 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 467 / 3e-166 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10020722 pacid=23140804 polypeptide=Lus10020722 locus=Lus10020722.g ID=Lus10020722.BGIv1.0 annot-version=v1.0 ATGGCTTTGAACAACAAGTTCATTCTCCTGGCTTCCATCTTTATACTGGGAGGATCTCTAGTTTCTGAGGCCACGGCGCGCTATACCCTTCCTGAAGCTT CCATACGCCTCAGGCATGAGCAGTGGATGACTCGTTACGGTCGAGTCTACAATAGTCCTAGTGAAAAGGAGGCTCGCTACCAGATCTTCAAACGCAACGT AGCCTTCATCGACTCGTCCAATGCTGATGGAGACAAGTCTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTGACTAACCAGGAGTTCAAAGCCTCTAGA AATGGGTTCAAGGGGCACATGTGCTCTCCCCAGCATGGGCCTTTCAGGTACGAAAATGTGAGTGCGGTCCCAACTACAATGGACTGGAGGAAGAAGGGAG CAGTCACTCCTATCAAAGACCAAGGTCAGTGCGGAAGCTGCTGGGCATTTTCGGCCGTGGGAGCCATGGAAGGAATCCACCAGCTGAGTACTGGCAAATT GGTGTCCCTTTCGGAACAGGAATTGGTTGACTGCGACACCAAGGGGGAGGACCAAGGATGTAACGGCGGGTTGATGGACGATGCGTTCAAGTTCGTTATT CAAAACAAGGGCTTGACCACCGAGACCAACTACCCTTATGACGCTGCTGATGGAACCTGCAATGCTAACAAAGAAAGCAGCAGTGCAGCCAAGATTTCGG GCTACGAAGATGTGCCAGCCAACAATGAGGCTGCATTGATGAAGGCTGTGGCGAGCCAACCGATTTCAGTGGCAATTGATGCAGGGGATTCGTCCTTCCA ATTCTACTCGAGTGGGATCTTTACCGGGGAATGCGGGACCGAACTAGACCATGGAGTGACGGCGGTGGGCTACGGAGAGAGCGGTGGGATGAAGTACTGG TTGGTGAAGAACTCGTGGGGAGCGCAGTGGGGAGAAGCTGGATATATTCGTATGCAAAAGGATGTTACAGCCAAAGAAGGTCTCTGCGGAATTGCTATGC AAGCTTCCTATCCCACTGCCTAA
AA sequence Show only first row Show all	>Lus10020722 pacid=23140804 polypeptide=Lus10020722 locus=Lus10020722.g ID=Lus10020722.BGIv1.0 annot-version=v1.0 MALNNKFILLASIFILGGSLVSEATARYTLPEASIRLRHEQWMTRYGRVYNSPSEKEARYQIFKRNVAFIDSSNADGDKSYKLGVNQFADLTNQEFKASR NGFKGHMCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCNGGLMDDAFKFVI QNKGLTTETNYPYDAADGTCNANKESSSAAKISGYEDVPANNEAALMKAVASQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGESGGMKYW LVKNSWGAQWGEAGYIRMQKDVTAKEGLCGIAMQASYPTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	0	1
AT3G52155			Phosphoglycerate mutase family...		Lus10023521 [exp]	1.4	0.8342
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	2.4	0.8475
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	2.4	0.8209
AT2G37960			unknown protein		Lus10027749 [exp]	4.2	0.7819
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	5.1	0.7717
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	5.3	0.8199
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	8.1	0.8127
AT1G06980			unknown protein		Lus10009561 [exp]	8.2	0.7372
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10025010 [exp]	8.9	0.7601
AT4G04980			unknown protein		Lus10018473 [exp]	9.5	0.7642

Compare expression of checked genes

Lus10020722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.